Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00683 ATGCAAGAAGCAGGGTTGGGAGTGAATATGATGAGCGCAGAAGTCTCAGCCGCCGCCGACCACCACCACCGTCAAGTTAAGGCGGAGATAGCCACCCACCCACTTTGCGAACAGCTTCTCGCTGCACACGTCTCATGCCTCCGCGTCGCCACACCCATCGACCAATTGCCCCTCATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACTATTCCCATTCCCATGACCGACAAGAACTCGACAACTTCATGACGCAATATTTGATTGTGTTATGCGCGTTGAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGACATTGAAAGCACCTTGCAAGCTCTGACAGGAGTGAGTTTGGGAGAAGGATCAGGTGCAACAATGTCAGATGACGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCAAGCGCTGACGGGCATGACATGATGGGATTTGGTCCATTGCTTCCAACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTCGGGAGGAAATATTAAGGAAACGGAGAGCTGGGAAATTGCCTGGGGACACAACATCGGTTCTAAAGGCATGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAACTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGTAATTGGCACAGCAATTCTCAATCGGTGACCTCTCTGAAGTCCAAGCGCAAGAGGTAG 855 0.4982 MQEAGLGVNMMSAEVSAAADHHHRQVKAEIATHPLCEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHYSHSHDRQELDNFMTQYLIVLCALKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00683 284 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Phco8g00683 284 Pfam KNOX1 domain 26 66 IPR005540 GO:0003677|GO:0005634
Phco8g00683 284 CDD homeodomain 210 271 IPR001356 GO:0003677
Phco8g00683 284 Gene3D - 206 280 - -
Phco8g00683 284 SMART KNOX1_2 24 68 IPR005540 GO:0003677|GO:0005634
Phco8g00683 284 Pfam KNOX2 domain 80 130 IPR005541 GO:0003677|GO:0005634
Phco8g00683 284 SMART HOX_1 209 274 IPR001356 GO:0003677
Phco8g00683 284 FunFam homeobox protein knotted-1-like 3 isoform X1 208 269 - -
Phco8g00683 284 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Phco8g00683 284 SMART KNOX2_2 76 131 IPR005541 GO:0003677|GO:0005634
Phco8g00683 284 SUPERFAMILY Homeodomain-like 209 274 IPR009057 -
Phco8g00683 284 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Phco8g00683 284 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00683 Phco-Chr8 6844399 6851655 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco8g00683 KNOX2 8.7e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00683 8 6844399 6851655 Phco8g00683 8 6844399 6851655 ECH