Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00636 ATGATTAGTGGTGTATGTATCTCTTTCCCGCTTCCAACTCTGGAATTAGAGAAAGAGCAGAAGCATCTCCCTGCAAAACCCTCTGAACATTACATTATTAGGGTTTTAATCTCTCCTCCTCTTCTTCTTCCTCTTGTAATGGCCTCTTGCATTTCTCTTTCTCTTTGTCCTCACACCTTTTGTTGCCGCCACCGCCCTTACTCTACGCGCCGTTCCCTTTCTTGCTCTCTCTCCTCTTCTTCCCTCCTCGATACGGATGGACCTAAAGTTATGCGTAAAAGATCGAGAAGGATAGAAGGTCCGAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTCTATGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTACATCCTCATCGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATACGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCATTAGATTCTCATACGCCAATTTTTGCGTCATCCTTTACAATGGAGCTTATACGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGTTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTATTGTGGCAGATGCATTATTGAGGAATGTTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCGTCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTCAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCACTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCAACTCTGGTAAAAGCGGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTACGGAAGTAGTCACTCTTTCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGTGTTATGGAAATGCTAAACCGGATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGCGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAGCTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCACTTGAGAAACAAAAGAGTCCTTTCGAATGGTTTCATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGCGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTATTAGCATGGAAATCTTTCGCCCACAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAGGGAAAAATAAGAATTACCACAAGATGCTTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTTCACAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGCGAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGGTGAGGAAAATGGTGAGGAAGTACAGTGGGAAACGGCCTGAAGTTATTGTCATTGCAGTAGAAAATCCTGCAGCTGTTCTTGCTAGTGAGATAAACATGAAGCTGTCTGGGAAATTCCATATGGATGGGACATCAACATTGAAAAAAGTGGTGGTTGGACATGGGAAAGAAAATCAGAGAACCAAAACGCAAATAAGAGATCGAATTGATGTCGGTGGTATACTACCTACTGAAGACATTGCTATCTCAAGTGGAGTTGAGGATGACTTATCGGATGTGGAAAATTCAGATAATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACAAAAGGAGAAGCCATCCCCTTTTAAGGATGGTAGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAGATCAGCAAAGAAAAATAAATGGAAACATGATGAAGTTAAGAAGCTTATTGGTATGCGTGGGGAGATGAATGACCGATTTCAAGTTGTGAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTCTGGACATCTCTGTTACAGAAATACGAGGAGGTGAAGAATGAGAAAAATAGCAAGAAGAAATGGCCGTATCTCGAGGAAATGGAAAGGATTCTGTCTGATAGCGAGACACTGGTATCTAAATGA 2745 0.416 MISGVCISFPLPTLELEKEQKHLPAKPSEHYIIRVLISPPLLLPLVMASCISLSLCPHTFCCRHRPYSTRRSLSCSLSSSSLLDTDGPKVMRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESIVADALLRNVSAAKGRVITTQFASNIHRLGSVKAAADSTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVISMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVVRKMVRKYSGKRPEVIVIAVENPAAVLASEINMKLSGKFHMDGTSTLKKVVVGHGKENQRTKTQIRDRIDVGGILPTEDIAISSGVEDDLSDVENSDNFFKPLVGSSPVEKSIKANNGYVPQKEKPSPFKDGSSEDTEECNSVNTSNSEPKSSRSAKKNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEEVKNEKNSKKKWPYLEEMERILSDSETLVSK 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00636 914 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 481 523 IPR011108 -
Phco8g00636 914 CDD GT1 821 886 - -
Phco8g00636 914 PANTHER RIBONUCLEASE J 39 912 - -
Phco8g00636 914 Pfam Beta-lactamase superfamily domain 148 284 IPR001279 -
Phco8g00636 914 CDD RNaseJ_MBL-fold 128 539 - -
Phco8g00636 914 Gene3D - 129 541 IPR036866 -
Phco8g00636 914 SUPERFAMILY Metallo-hydrolase/oxidoreductase 125 539 IPR036866 -
Phco8g00636 914 Gene3D - 823 884 - -
Phco8g00636 914 SMART Lactamase_B_5a 137 334 IPR001279 -
Phco8g00636 914 MobiDBLite consensus disorder prediction 778 823 - -
Phco8g00636 914 ProSiteProfiles Myb-like domain profile. 815 879 IPR001005 -
Phco8g00636 914 Gene3D - 326 476 IPR042173 -
Phco8g00636 914 MobiDBLite consensus disorder prediction 800 814 - -
Phco8g00636 914 Pfam Myb/SANT-like DNA-binding domain 821 904 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00636 Phco-Chr8 6351779 6367805 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco8g00636 Lactamase_B_2 1.7e-10 CL0381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00636 8 6351779 6367805 Phco7g01981 7 33641417 33650968 PCT