Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00622 ATGGCCCCTCCCCTTTGTAGTGCCTTCAACGGAGAAATTGATGGTGAAAATCTATCTTACGTGTTTGATTTCTGGGCAACCGATCACTATCCCTATTTTCCTCATCAACCTATTTCCAAAAGTAGCAGTTCTACCTTAGTTCTCCCCATTTGTGACGGAACCATAAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTGATTGGTTAGAAAATTTGATCGGAAACTCCTCCGTTAGTTTCCTCAACACCAACGCCAACAACAGCAGCAATAGGAATAGGGATAGTATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACTCAAAGATATCTGGCAGCGGAACCAGAAGAAGAGGCACCAGAAGATATAAATAGTTTTGAAGGTGGTGGGGCTGAAGAAGATGGTTGTCACGACGGAGTGCGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGATAAATCGCATGCTTCAATTTTACTATCAGAACTCAGAGCCAACGCTTTAGTATTCGGATCTTCGTTTCAAAGAGTTGCTTCTTGTTTTGTTCAAGGACTAACGGAGAGGCTGAATCTGATTCAGCCCACCGGGCCCGTGAGCCCGATGCCACCCATGATGAACATTATGGACGCAGCCTCGGAAGAAATGGAGGAAGCATTCAGATTGGTTTACGAGCTGTGTCCACACATCCAGTTTGGGCACTTTGTTACTAATTCCATAGTATTGGAAGCCTTTGTGGGTGAGAGTTTTGTCCATGTCGTGGATCTCGGCATGACTCTCGGTTTACAACATGGACACCAATGGAGAGGACTGATGCAGAGCCTTGCCAATCGCAAGGCCGACGAACGTGTTCGTCGTCTGCGAATCACGGCAGTGGGACTCTGCGACAGACTTCAATCCATTGGCGACGAACTCTCAGTATATGCAACTAATTTGGGCATCAACTTCGAGTTCTCAGTGGTGAAAAAGAATTTGGAAAATTTGGAACCTGAGGACATAGAAGTGAGGGAAGAAGAGGTTCTTGCGGTGAACAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCACGGGCTTGGGCCGAAAGTGTTGGTGATGATGGAGCAGGACTCCAGTCACAACGGACCCTTTTTTCTCGGGAGATTTATGGAATCATTGCACTATTATTCTGCTATATTCGACTCCTTGGATGTTATGTTGCCCAAGTATGACACCAAGAGAGCGAAGATGGAGCAGTTCTATTTCGCTGAGGAGATAAAGAACATAGTGAGCCGTGAAGGGCCGTTGAGGATGGAGAGACACGAGAGAGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCTGCGCCGATTAAGATGGTGGCTCAGGCGAAGCAGTGGCTTCAGAATAGCAAGGTGTGTGAAGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCGAAGCCTATTGTGGCGGTTTCTTGCTGGAAATGCTGA 1560 0.4776 MAPPLCSAFNGEIDGENLSYVFDFWATDHYPYFPHQPISKSSSSTLVLPICDGTIRDNKRVKRTVGIPVDWLENLIGNSSVSFLNTNANNSSNRNRDSIPKLHFRDHIRTYTQRYLAAEPEEEAPEDINSFEGGGAEEDGCHDGVRLVQLLIACAEAVACRDKSHASILLSELRANALVFGSSFQRVASCFVQGLTERLNLIQPTGPVSPMPPMMNIMDAASEEMEEAFRLVYELCPHIQFGHFVTNSIVLEAFVGESFVHVVDLGMTLGLQHGHQWRGLMQSLANRKADERVRRLRITAVGLCDRLQSIGDELSVYATNLGINFEFSVVKKNLENLEPEDIEVREEEVLAVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMMEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLQNSKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00622 519 ProSiteProfiles GRAS family profile. 138 518 IPR005202 -
Phco8g00622 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 513 IPR005202 -
Phco8g00622 519 Pfam GRAS domain family 147 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00622 Phco-Chr8 6229725 6231284 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco8g00622 GRAS 4.9e-108 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00622 8 6229725 6231284 Phco8g00622 8 6229725 6231284 ECH