Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00615 ATGGAAGGCTCTGAATCCGATTCTGCGCCACTTTCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTTCTTCTCCCCCTCCTCCTCCTCCTCAACCGTCAGATCTCAATCACGCGGTGGAGCATGAGACACTCTCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGAGGATGAAAGTGAGGACAAAGTTTCCGACTTGAACGACGGTGGAGGAGTTTGCGACGAAGAAACTGCCAAGGGTGATGGAGATTGTAGGGGTTCGGAGACAAATAGTTGGAATGAGGAAGTGGGTGTTGATGTTGATGCCGATGATGACGGTGTTGGTGTTGGTGATGTTCATGGTGATGATGGAGTGGAGACGATGGAAGAGAGAAACAGTGATATGACTCACCACTACCCTTTAAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCATCCTATTAGGAGGAAAACCCAGGCTGTTAAAGAGAAGGAGGGAGAAAGAGAAGAACCCACAGACAGATCAAGCACAACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACCAGAGGAAAATTTTCAACAACAGCACTGGCACCAGTTTTTGAACTTAACTTTCTTGGCCTGCCTATTCGTCAGGGGGAGAGGGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGATGTGAACCTCCTTCAGGGTTTGGTAATGGAGGGCCTATGTCATTACAGGGTGTAGCACGACCATCTGTACCCTCCTGGTCTTCTCCAAGATCATTAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGCTCTGACTGGAATGGATACCAGGCATCTGTTTACCTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCTTGAACAACCCAGCAGTCGATACAAATGTTTACTTGCACCATCAAAAGCAGATATCCGTGGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGTAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTCCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTTGCAGCCCTTGATGATGTCTGGACTTGGTGACCAGTCATATTCAAATTCAGCTAGTGTCGAGGTGGCTGGGATAGGTGAAAGTCCAGGTGAAACTGATGCAACAATTCAGCAATCTGTGTAA 1452 0.4559 MEGSESDSAPLSISNGEDPQLGASSPPPPPPQPSDLNHAVEHETLSGELQSKLDLKGEDESEDKVSDLNDGGGVCDEETAKGDGDCRGSETNSWNEEVGVDVDADDDGVGVGDVHGDDGVETMEERNSDMTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVKEKEGEREEPTDRSSTTECKYYQRSGGCKFGKSCKYNHTRGKFSTTALAPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCEPPSGFGNGGPMSLQGVARPSVPSWSSPRSLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVLNNPAVDTNVYLHHQKQISVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGDQSYSNSASVEVAGIGESPGETDATIQQSV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00615 483 Gene3D - 111 176 - -
Phco8g00615 483 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Phco8g00615 483 MobiDBLite consensus disorder prediction 1 118 - -
Phco8g00615 483 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Phco8g00615 483 MobiDBLite consensus disorder prediction 167 187 - -
Phco8g00615 483 Gene3D - 350 411 - -
Phco8g00615 483 Gene3D - 413 461 - -
Phco8g00615 483 Gene3D - 178 267 - -
Phco8g00615 483 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Phco8g00615 483 SUPERFAMILY CCCH zinc finger 374 398 IPR036855 GO:0046872
Phco8g00615 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Phco8g00615 483 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g00615 483 SUPERFAMILY CCCH zinc finger 413 441 IPR036855 GO:0046872
Phco8g00615 483 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Phco8g00615 483 SMART c3hfinal6 184 211 IPR000571 GO:0046872
Phco8g00615 483 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Phco8g00615 483 SMART c3hfinal6 369 396 IPR000571 GO:0046872
Phco8g00615 483 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Phco8g00615 483 SUPERFAMILY CCCH zinc finger 186 213 IPR036855 GO:0046872
Phco8g00615 483 ProSiteProfiles Zinc finger C3H1-type profile. 369 397 IPR000571 GO:0046872
Phco8g00615 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 259 IPR000571 GO:0046872
Phco8g00615 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 209 IPR000571 GO:0046872
Phco8g00615 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 371 396 IPR000571 GO:0046872
Phco8g00615 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 163 IPR000571 GO:0046872
Phco8g00615 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 441 IPR000571 GO:0046872
Phco8g00615 483 MobiDBLite consensus disorder prediction 167 186 - -
Phco8g00615 483 SUPERFAMILY CCCH zinc finger 136 165 IPR036855 GO:0046872
Phco8g00615 483 SUPERFAMILY CCCH zinc finger 236 260 IPR036855 GO:0046872
Phco8g00615 483 PANTHER PROTEIN PHOSPHATASE RELATED 61 460 - -
Phco8g00615 483 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00615 Phco-Chr8 6174360 6178366 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g00615 zf-CCCH 7.8e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00615 8 6174360 6178366 Phco7g02009 7 34413818 34418147 ECH
Phco8g00615 8 6174360 6178366 Phco8g00615 8 6174360 6178366 ECH
Phco8g00615 8 6174360 6178366 Phco7g02009 7 34413818 34418147 PCT