Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00614 ATGGCGGGTTCGGAGGAAGTATTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCTGAGTACCGCCCAACCGTGGCGGAGTTCCAAAACCCGATCGCCTACATCTCCAAAATCGAGAAAGAAGCCTCTCAATACGGAATCTGTAAGATCATTCCCCCGCTTCCCCCTTCTCCCAAGAAAACCGCAGCTGCCAACCTCACGCGCTCCCGGCCCACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTCTGGCACAGCGGCCATCACTACTCCCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTAAACAAAAACAAACCCAAACCTCTTGAACTCGAAACGCTCTACTGGAAAGCCACCTTAGACAAACCCTTCTCCGTTGAATATGCGAACGACATGCCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTCGCGCGATGCCGATTATGTTAGCGACACCGCTTGGAACATGAGGACGGTTTCGCGGGGGAGCGACTCGCTCCTTAGGTTCATGAAAGAGGAAATTCCCGGTGTGACGTCACCCATGGTCTATGTGGCAATGTTGTTCAGCTGGTTCGCGTGGCACGTGGAGGATCACGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCGGTCGCGTTCGAGGACGTTGTTAGAGTTCATGGCTACGGCGGAGAGATTAATCCTCTTGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCTCCGGAGGTTTTTGTTGGCGCCGGTATTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTTGTGACCTTTCCAAGAGCGTATCATACAGGATTTAGTCATGGGTTTAACTGTGGAGAGGCAGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGCAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTTTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGAAGTTCTCGGCTTAAATATAAGAGAAACGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGGTCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAGTTACGCATTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTATGAGAGAATGGATTCCCCAAATTTTATTTCTGATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTCATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTTTGCCATTCAGTTCGGATGGGAACATATACCCTTCAAGTTCAAAAACACTGCAAGGACACAGTGAAAAGGAAACAGATCAAGGTGATGGTTTGTCTGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAACCTAGAGAACCAGCAGCTACGTACCTTATGTCAGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTGCAAATGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGATGGACTAAGCAAAATGCCCAACATGATTCAAATGGTGTTCCCGTTCAATCTGTTGAGCACCATGCACAGATTGCTGATCAAAATTACGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACGGCTCTTGCATTATTGGCATCAGCGTATGGAAATTCTTCTGACTCCGAGGAAGACCAGGGGGGATTAGATATTGCACTTGATGGTGATGAATTGAATGTAATAAACCATCTATCCACTAATGGATTTCAGGAGATGTCAAGTATGCCTTCTCATTTCAAAGATCCCCTTGCTAGTCCCATAGTTAGAGTCATTGGACTTGATAAAGGAGATGATATTCATTCAAGACGAATGGACAATTATGAGTATTATATGCATAAAAGAGTTGAGCACATTATGACTCCTTTTGACTATGTTAAGTCAGAAGATCATGACAGCACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCTCACCTTGAATCGTTCCCAAGATACTCACACCAATGAAGACTCGTCTAGACTGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGATTGTTGCAGAGGAACTGAGGATTGGTTATACGTGGAAGAATACTATATACAGGCAAGCCAACAGGGAAGATGAGGTGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAATCTTAGCCGTTCAGCACTTTACATTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGCTAGCTTGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTTCGAAGATGTTGAGAATGAAACAAGCTTACATGGGTGGCCATTGCCAGATGAGAAAATTGAGAGATCAGTAAGTAACCACAAAAGCAATACTTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAACCTGGGAAGAAAGTTTTGCTGAGAGAGATTGGCTTTCAGATAATTCCATTGAAGATAAATCCAATAAATATCGAAGGAGGATTCTTGGGAGTAAGCGAACGAGGCATATTGAGAGAGATGATACTACTTCACAAGGGGATTATTCTCCTCTGCCACATCATAAAAAGCCTATTAGCAAGCATTCAGAATCTAGTGAAAATGATGCAGTTTCTGATGATTTGCTGGATGATGATTCTTGTATACAGCATTGGAGGAGGGCTAACACCAATGAAGCTAAATTTGTTGGTGGTGATGTGTTTTCAGATGATACAATGGACTATGGGTCTGATTGGTTGTGTAGGGGAGAGCTTAGCAGTGGGCAAGATGCTATTTCAGACGATTCATTGGGTACTTGTTCTCTTCAGCTTCGCAGAAAGACTCCTAAAGGCAAGTATGATAAATACATTACGGAGGAAGACATGATTTCTGATGACCAAAGCGAGGTTTGTTTTTGGAAGCAGAGAGAGAAGATATCTAAAGGCAGACAAAGATCCCTTTCTGCTAAAAATAAAGATAATCTGGAGCACCATAGGCAGAAACAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACCTTGCAGTAGAGAATACTATTTCTGATGACCAAATGGAGGGTCGTTTTTTCAAGTATCAAAGAAGGATTCCTAAAAATAGGCAAGCCAAGTTCATCGATGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATCTTATGGAGGACTTGGCAAAAAATAATTTTTATATGCTATATAGAACTCGTAAAAGGAAGCAAGCTAAAGATATGGATGAGGACAATATAGATTCAGATGATCAAATGGAGGATATTTTTCATCTGCAGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAATCTCAGATTCTTCAACCAAAGAAACAAACTAATCCACTCCTTTTGAGAAACAAGACATCCCGTCCTATGAAACAAGGTGCTCCTATGCTTATGAAATCAAAGGCTGCTCGGCAGGCAAAGAATCAATCTGGAAACTCAAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGACCTCGCACACGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCTGAAGGAAACTTGAAAGAAAAGAGAATCAAAAGGGAAAAGGTGAAGAATACAACAGCTGCGAAGGTTTCAGTTGGCCATGCCAAAACAAAGGATGAGGAATCCGAATATCAGTGTGACATTGAGGGCTGTACCATGGGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGTGGAAAGAATTTTTTTTCCCACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGTCCATTGAAGTGCCCTTGGAAAGGGTGTAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAGAAGAATTGTTGA 4596 0.4384 MAGSEEVLPWLKSLPVAPEYRPTVAEFQNPIAYISKIEKEASQYGICKIIPPLPPSPKKTAAANLTRSRPTFTTRQQQIGFCPRRAQPVRRRVWHSGHHYSLREFEAKAKAFHKTYLNKNKPKPLELETLYWKATLDKPFSVEYANDMPGSAFSPLRASRDADYVSDTAWNMRTVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLAFCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAIVLLPRSSSDFSVCSKLRIGSQQLKVNPDFSLNVYNYERMDSPNFISDDLMFNRNHGIKQVKSFHSVKEKFVTLCERNRVLPFSSDGNIYPSSSKTLQGHSEKETDQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFANAHEDASIPKPRTYTGWTKQNAQHDSNGVPVQSVEHHAQIADQNYEEALNSGREKGNTALALLASAYGNSSDSEEDQGGLDIALDGDELNVINHLSTNGFQEMSSMPSHFKDPLASPIVRVIGLDKGDDIHSRRMDNYEYYMHKRVEHIMTPFDYVKSEDHDSTSGVAFRNTRAVPHLTLNRSQDTHTNEDSSRLHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKIVAEELRIGYTWKNTIYRQANREDEVRIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYIKQIPYNSVIYKAFGQSSPASLPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDFEDVENETSLHGWPLPDEKIERSVSNHKSNTSTRKSGKKWKKSVEKGGTWEESFAERDWLSDNSIEDKSNKYRRRILGSKRTRHIERDDTTSQGDYSPLPHHKKPISKHSESSENDAVSDDLLDDDSCIQHWRRANTNEAKFVGGDVFSDDTMDYGSDWLCRGELSSGQDAISDDSLGTCSLQLRRKTPKGKYDKYITEEDMISDDQSEVCFWKQREKISKGRQRSLSAKNKDNLEHHRQKQQQRNLRSRQDKHLAVENTISDDQMEGRFFKYQRRIPKNRQAKFIDEEDVMSDDQLKDHFQKPQRSTRRSRQNKYNDKDLMEDLAKNNFYMLYRTRKRKQAKDMDEDNIDSDDQMEDIFHLQHKRTLQSKQSKSQILQPKKQTNPLLLRNKTSRPMKQGAPMLMKSKAARQAKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGNLKEKRIKREKVKNTTAAKVSVGHAKTKDEESEYQCDIEGCTMGFGSKQELLQHKRNICPVKGCGKNFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00614 1531 Pfam jmjN domain 18 51 IPR003349 -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1033 1048 - -
Phco8g00614 1531 SMART cupin_9 164 333 IPR003347 -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1355 1371 - -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 953 979 - -
Phco8g00614 1531 ProSiteProfiles Zinc finger C2H2 type domain profile. 1439 1468 IPR013087 -
Phco8g00614 1531 ProSiteProfiles JmjC domain profile. 164 333 IPR003347 -
Phco8g00614 1531 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Phco8g00614 1531 SUPERFAMILY beta-beta-alpha zinc fingers 1479 1523 IPR036236 -
Phco8g00614 1531 FunFam Probable lysine-specific demethylase ELF6 1496 1525 - -
Phco8g00614 1531 Gene3D Cupin 10 337 - -
Phco8g00614 1531 ProSiteProfiles Zinc finger C2H2 type domain profile. 1499 1530 IPR013087 -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1301 1324 - -
Phco8g00614 1531 SMART c2h2final6 1469 1493 IPR013087 -
Phco8g00614 1531 SMART c2h2final6 1439 1463 IPR013087 -
Phco8g00614 1531 SMART c2h2final6 1499 1525 IPR013087 -
Phco8g00614 1531 SMART c2h2final6 1416 1438 IPR013087 -
Phco8g00614 1531 FunFam Probable lysine-specific demethylase ELF6 1466 1495 - -
Phco8g00614 1531 ProSitePatterns Zinc finger C2H2 type domain signature. 1471 1493 IPR013087 -
Phco8g00614 1531 Gene3D Classic Zinc Finger 1437 1523 - -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1219 1251 - -
Phco8g00614 1531 Pfam JmjC domain, hydroxylase 197 315 IPR003347 -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1015 1052 - -
Phco8g00614 1531 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1041 - -
Phco8g00614 1531 FunFam Probable lysine-specific demethylase ELF6 10 337 - -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 498 517 - -
Phco8g00614 1531 ProSitePatterns Zinc finger C2H2 type domain signature. 1441 1463 IPR013087 -
Phco8g00614 1531 SUPERFAMILY beta-beta-alpha zinc fingers 1439 1475 IPR036236 -
Phco8g00614 1531 SMART JmjN_1 16 57 IPR003349 -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1154 1185 - -
Phco8g00614 1531 SUPERFAMILY Clavaminate synthase-like 96 338 - -
Phco8g00614 1531 MobiDBLite consensus disorder prediction 1296 1371 - -
Phco8g00614 1531 ProSitePatterns Zinc finger C2H2 type domain signature. 1501 1525 IPR013087 -
Phco8g00614 1531 ProSiteProfiles Zinc finger C2H2 type domain profile. 1469 1498 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00614 Phco-Chr8 6160849 6168176 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco8g00614 JmjC 9.7e-37 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00614 8 6160849 6168176 Phco8g00614 8 6160849 6168176 ECH
Phco8g00614 8 6160849 6168176 Phco4g00315 4 1995616 2014817 PCT
Phco7g02010 7 34443608 34453221 Phco8g00614 8 6160849 6168176 PCT