Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00601 ATGGTGGTGACTGATGAAAGGAACCGCGATCGTGCGAATAGGAGGGACGTCGAGGAGCTTCCACAATATGATCAAGCTGTGACTGTGGCATATTATGGGGAGGAGTTGCATGGGGGCGTACCTCTACCCCACTCAAGAATCTCTCCTTCAAACATGGATAAACAAAACAAGGTGGTGGCGAATAAATACAAACGATTGAATAACAGTCAGACCAAGCAAGCAACGCCTGCTGAGGCTCAGAAATTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCTTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCAAGTTTTGTGAAGTCTTTAATTAGATCACATGTTGCTAGTTGTTTTGGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATAATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGATGGGATTGAGTGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGATTTATATAATAAGAGCTAATAATACGAGGGAACTAGACGGGGTCTTTCTGAATCTTGATAGTTGCACAAAACAAAAAATGGGAGGCAAAGATAACACAGATACTGATGTTGTGGCATGCAATAGCTCAAAGAGAAAACATGGCAAATCTGTCCCACTAGATATCCAAAAGAAAAAGAAGGCAAACTTGTCGAGATTGAGACCTAAGGCCGGGCCATCAGTAGAACAATCCGAAAATGATAGCGAGGAAGCTCTCTCAGAAGTTATGGAGGAGTTTAAAATGCTTGAGTTTGAAGATTTAAGAGGCTTTGAAAATTTTAGCATCATAGTTGATGGAGTGTCAATAGATGTTGAATTTCCTACCGAAGTTAGAAATAAGTACTACAGGCTATGCTGCAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAGGGTTAGTGTGATATGCACCCCACGTTTTGAATTTGCTAACTGGGACAAAACATTGCTAGCCTTTGAGCATCTGGGCATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGAAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCATATAGAAATGAACACAGTCGTGCAGACGATGAAATAAGGAACTTGGAAGTCAAGCTTGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGTATAGCTGAAAACTATCAGATGAAGTTTCAAAGAGAGGTCGATGCTCCTTGGTGA 1449 0.4141 MVVTDERNRDRANRRDVEELPQYDQAVTVAYYGEELHGGVPLPHSRISPSNMDKQNKVVANKYKRLNNSQTKQATPAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLIRSHVASCFGMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKMGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKIYIIRANNTRELDGVFLNLDSCTKQKMGGKDNTDTDVVACNSSKRKHGKSVPLDIQKKKKANLSRLRPKAGPSVEQSENDSEEALSEVMEEFKMLEFEDLRGFENFSIIVDGVSIDVEFPTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIISETVNIADAIRVSVICTPRFEFANWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEKNDVSEAKKYLAYRNEHSRADDEIRNLEVKLEELKGACNGFGAYLGSLKGIAENYQMKFQREVDAPW 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00601 482 CDD B3_DNA 119 210 IPR003340 GO:0003677
Phco8g00601 482 SMART B3_2 121 212 IPR003340 GO:0003677
Phco8g00601 482 ProSiteProfiles B3 DNA-binding domain profile. 121 212 IPR003340 GO:0003677
Phco8g00601 482 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 64 214 IPR044837 -
Phco8g00601 482 Pfam B3 DNA binding domain 121 211 IPR003340 GO:0003677
Phco8g00601 482 Coils Coil 425 452 - -
Phco8g00601 482 Gene3D - 100 214 IPR015300 -
Phco8g00601 482 SUPERFAMILY DNA-binding pseudobarrel domain 116 212 IPR015300 -
Phco8g00601 482 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00601 Phco-Chr8 6044659 6048555 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco8g00601 B3 3.4e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00601 8 6044659 6048555 Phco8g00601 8 6044659 6048555 ECH