Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00575 ATGTCGTCGATGAATTCGCCGTGCGCTGCGTGCAAGCTTCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGCGTGGGATTGATTTCGTTACTACAGCAACGGCTCCGTCAAATCCAGATGGAGCTTCACAGCGCGAAGAAGGAATTCTCGACTTATGTTAGTCCTCAGACCATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCACCTGCTGAGATTGTCGGGCCTCCTCCGCATCAACCTATGTTCAATCATGGTGGCAACAACATGGTCCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGTCAGACGGTGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCGCAGCAGATAATTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTATGAGCACCAAGTTTATGGTGGTTTTGAACCTGGAAATGGTGGATTTGGGAACCAAGCAGAATTGTTGTCTCCTTCTTTGGCTCATGGAAATTTTAGTAATGTTGGAGCTTACCAAATGCAGCAGCAAGGAGAACAACATCCCATTGAGGCACAGTTGCTCCTCTCGCCACAGCAGGGACAGCCCCATCAGCAACAACAGTGTGAAAGTGAGGATGGAAGGAATGTGCTTGATTTCTCAATCAAGTAG 822 0.5365 MSSMNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQMELHSAKKEFSTYVSPQTMQILLANPGMVPPAEIVGPPPHQPMFNHGGNNMVPQQILVGHGGGQTVVRDPQQQDFQEAQQIILATREQQQMFRNYEHQVYGGFEPGNGGFGNQAELLSPSLAHGNFSNVGAYQMQQQGEQHPIEAQLLLSPQQGQPHQQQQCESEDGRNVLDFSIK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00575 273 Coils Coil 86 106 - -
Phco8g00575 273 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Phco8g00575 273 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Phco8g00575 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00575 Phco-Chr8 5719276 5720097 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco8g00575 LOB 6.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00575 8 5719276 5720097 Phco8g00575 8 5719276 5720097 ECH
Phco4g01079 4 8696010 8696915 Phco8g00575 8 5719276 5720097 PCT