Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00574 ATGACCCCATGCGGCGCGTGCAAGTATCAACGGCGGAGGTGCGGGGCGGATTGCCTTTTGGCGCCGCATTTTCCGGCAGAGAGCATACAGCGGTTCGCGTACGTTCACCATGTGTTCGGCGGGGGCAACGTGAGTAACATTTTGAAGTCAACGAAGCCGGAGTTGCGGAAGTGGGTGGCGAGGGCGCTGACGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTTGGGGTGATATGGGAGCAGGAGGAGAGTCTTCGAATCCTGAAAGAGAAGCTGGAGAAGGCAAAAAGGGAAGTGGCCCAATACGTGGGCCCAGAGGTTGAGCAGTGTTCCTCCGATCCGCATGCGAATTTGGTGGACCTTGAGGCTCCTCTCTCTGTCACCGATGATGATCCTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAACCACCTTCTTCGCGGCTGCAGCCACCTCAAGGTGACGACGCTAAGGGTGAGACTGTTTCTCCTCCTTCTTGA 516 0.5775 MTPCGACKYQRRRCGADCLLAPHFPAESIQRFAYVHHVFGGGNVSNILKSTKPELRKWVARALTYQAEARVRDPVHGCVGVIWEQEESLRILKEKLEKAKREVAQYVGPEVEQCSSDPHANLVDLEAPLSVTDDDPDLSSWDPFPAWEPPSSRLQPPQGDDAKGETVSPPS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00574 171 Coils Coil 82 102 - -
Phco8g00574 171 MobiDBLite consensus disorder prediction 128 171 - -
Phco8g00574 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 112 - -
Phco8g00574 171 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Phco8g00574 171 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00574 Phco-Chr8 5711378 5711893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco8g00574 LOB 7.6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00574 8 5711378 5711893 Phco8g00574 8 5711378 5711893 ECH
Phco8g00574 8 5711378 5711893 Phco7g02091 7 36660356 36666759 ECH
Phco8g00574 8 5711378 5711893 Phco7g02091 7 36660356 36666759 PCT
Phco8g00574 8 5711378 5711893 Phco4g01079 4 8696010 8696915 PCT