Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00573 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTTGTCAGATTCTTGGTGAGGTTGCTCAGAGCGAAGATGGGTCTCAGAGAATAGCCACGCTTGAGGATTTTCTCCAAAAGTTGGAAGATGAGAAGAGGAAGATCGACTCCTTCAAACGTGAACTTCCTCTCTGCATGGTCCTTGTGAACGATGCTATTACTAAATTGAAAGAGGAGATAAATGGAGGAGTGAGAATGCACGAAGAACCCGTTGTTGAAGAATATATTCCACTTAAGAAAACCAATTCTGAAGGAAGTGAGACTTTAAACATGGGTACGGAACGCAGTAGCATGAAGAATTGGATCAACTCTGTTCGGCTATGGAACGTTGAATCCAAATCGAGGAATGGAGAGGACGATCGATGTGTCCCCAACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCACCACTAGCATTAAATGGAAACAATCGTGTGTCAAAGACAGTGATGAGTGAAGACAAGGGGGTGTCACAGATTCCTAGCCTTGGTTTGATGAGACCAGTGTATGAATTGAATCATAGAAAAACAGAAAGTGGTAATGAACATGGTTCGTCCTTGATTACAAGCTCATCAGAGATAAAGTGTGAAGCACCACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAGCTTCATAGGCGATTTGTTGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTCTTCATTTGGGCAGGCTAATAGTGGCTTATGCCTGATGGTACAAGATAAATGTGGAGATAATAATAAATCAAGAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTGTTCTTAGGAGGGTCTGGACGAAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCACAATTGGAAATATGGCCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1086 0.4383 MELSLDLSLAFVPGRTVCQILGEVAQSEDGSQRIATLEDFLQKLEDEKRKIDSFKRELPLCMVLVNDAITKLKEEINGGVRMHEEPVVEEYIPLKKTNSEGSETLNMGTERSSMKNWINSVRLWNVESKSRNGEDDRCVPNNPNQPQNETNKSRGAPLALNGNNRVSKTVMSEDKGVSQIPSLGLMRPVYELNHRKTESGNEHGSSLITSSSEIKCEAPPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVSSFGQANSGLCLMVQDKCGDNNKSRGNLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKYGLHHQPEAELL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00573 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 348 IPR044787 GO:0003700|GO:0006355
Phco8g00573 361 MobiDBLite consensus disorder prediction 129 162 - -
Phco8g00573 361 MobiDBLite consensus disorder prediction 309 324 - -
Phco8g00573 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 226 281 IPR006447 GO:0003677
Phco8g00573 361 Coils Coil 37 57 - -
Phco8g00573 361 Gene3D - 225 283 - -
Phco8g00573 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Phco8g00573 361 MobiDBLite consensus disorder prediction 334 349 - -
Phco8g00573 361 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Phco8g00573 361 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Phco8g00573 361 MobiDBLite consensus disorder prediction 137 162 - -
Phco8g00573 361 FunFam Myb family transcription factor 225 283 - -
Phco8g00573 361 MobiDBLite consensus disorder prediction 309 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00573 Phco-Chr8 5705355 5707447 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco8g00573 Myb_DNA-binding 8.1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00573 8 5705355 5707447 Phco8g00573 8 5705355 5707447 ECH
Phco8g00573 8 5705355 5707447 Phco4g01077 4 8661699 8667171 PCT