Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00571 ATGGATCGGGCGGCGTTGACGGTCGGACCGGGCATGGACATGCCGATCATGCACGACAGTGACCGTTACGATCTGGTCCGTGACATCGGGGCCGGAAATTTCGGCGTGGCCAGGCTGATGCAGGATAAACAGACCAAGGAACTCGTTGCCGTCAAGTACATCGAGAGGGGCGATAAGATTGATGAAAATGTGAAGAGGGAAATTATTAACCACAGGTCTTTGAGACATCCCAATATTGTTAGGTTTAAAGAGGTTATTTTAACACCTACTCATCTGGCGATTGTAATGGAATATGCATCTGGAGGCGAGCTCTTTGAGAGAATCTGCAATGCCGGGCGTTTTACTGAGGATGAGGCTCGATTCTTCTTTCAACAACTCATATCTGGGGTTAGTTATTGCCATGCTATGCAAGTATGTCATCGGGACTTGAAGCTGGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTTCATTCACAACCGAAGTCAACTGTGGGGACTCCTGCATATATTGCTCCAGAAGTATTGCTGAAACAAGAGTATGATGGCAAGCTTGCAGATGTCTGGTCGTGTGGAGTGACCCTATACGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGAGAATTCTTAGTGTCCAATATGCCATTCCTGACTGTGTTCAAATATCTCAAGAGTGTCGTCACCTTATCTCAAGGATTTTTGTTTTTGACCCAGCAGAGAGGATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCGGACCTGATGGATGAGAAGATAATGAGTAATCAATTTGAAGAGCCAGACCAGCCCATGCAGAGCGTTGATACGATCATGCAGATAATTTCAGAAGCTACCGTACCAGCAGCTGGGACCTATTCTTTTGACCAGTTAATGGCGGAGCAAATTTATGACTTAGAATCTGAATCTGATGCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAG 1083 0.4543 MDRAALTVGPGMDMPIMHDSDRYDLVRDIGAGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKLADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRILSVQYAIPDCVQISQECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMSNQFEEPDQPMQSVDTIMQIISEATVPAAGTYSFDQLMAEQIYDLESESDAESELDIDSSGEIVYAI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00571 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Phco8g00571 360 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00571 360 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00571 360 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Phco8g00571 360 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Phco8g00571 360 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00571 360 SUPERFAMILY Protein kinase-like (PK-like) 16 320 IPR011009 -
Phco8g00571 360 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Phco8g00571 360 PANTHER SERINE/THREONINE KINASE 22 308 - -
Phco8g00571 360 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Phco8g00571 360 CDD STKc_SnRK2 22 278 - -
Phco8g00571 360 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00571 Phco-Chr8 5688655 5693055 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Phco8g00571 Pkinase 2.4e-71 CL0016