Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00557 ATGGTAGTGAGGGTGAGAGTGGGAGGCAGGGCCCTTGACGGCGACCACAGGTCTCTGTCTGCCTCTCCGGACGGCACGCGCGCTCAGGCTATGCTATTCATTCATTCTGCGATGCATACAAATTTTCTAGCAGAGGCAGGACAATGGGACATGTGTTTGTTCTGGCCAGGGGAATCCACCAAGATAAAGAAGATGATCCAAGAACTGTTGGGTGGAGCTGGCCTCTTAGCAGGAGAAAGAAAGCCCTCCATTAATGGTGGGGGAGGTGGAGGAGTTCTACTTCCAACTACACCATCTTCCTCTTCTCTTCCTTCTACCGCAACTAATAATGTTACCCTCACATCCGCCACCACAACTACCACTACTGCCACCACCACTACCACTCCCACGTCCGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCGCGCCACTTCTGCAAGACGTGCCGTCGCTACTGGACCAAAGGTGGCGCTCTCCGAAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAGAACATCAGCGTGGCGAACTCGGTGGCAAAGACTGCCTCAATGAAGATAAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAAAATCAAAACCCTAACCCTAACCCTACTCCCATGTCCATCAAGGAAGAAGGGACCCTGATGGGCCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCATCGCTTGGTCTGTTTGGGAGAAGCCATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCAGTGATAACTCCTCACAAATGTTTATGGGGAACATGGCTTCTAATTATTCCCCTTCTGTGTCCAACAACATTATGGAGACAACTTCAGTTGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCTGAAGGAGGTGGTGGAGGTGTGGTGGTGGTCCTAGTGGGTAGCATATGCAAATGCAAGAACTTTGTTTTGTTACGAGAAATCGACGAATCTAAGGGTAAACCAGCCTTTTGCAAGGGTTTCCTCAAATAG 1323 0.5034 MVVRVRVGGRALDGDHRSLSASPDGTRAQAMLFIHSAMHTNFLAEAGQWDMCLFWPGESTKIKKMIQELLGGAGLLAGERKPSINGGGGGGVLLPTTPSSSSLPSTATNNVTLTSATTTTTTATTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNISVANSVAKTASMKIKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPTPMSIKEEGTLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSHQDQQQNGGFLLGEHHNSGIQELYQKLRSSSANNYCSDNSSQMFMGNMASNYSPSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAEGGGGGVVVVLVGSICKCKNFVLLREIDESKGKPAFCKGFLK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00557 440 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 125 336 IPR045174 GO:0003700|GO:0006355
Phco8g00557 440 Pfam Dof domain, zinc finger 134 190 IPR003851 GO:0003677|GO:0006355
Phco8g00557 440 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Phco8g00557 440 MobiDBLite consensus disorder prediction 115 136 - -
Phco8g00557 440 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00557 Phco-Chr8 5546235 5552849 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco8g00557 zf-Dof 4.2e-32 No_clan