Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00532 ATGTTTCACTACAACACTAAGCTCGCACTGGCTTTCACCATCTTCGTTTTCTGTTCAACGATCGCCCAAACCAACACCAACTGCACGCGCAGTTGCGGACAACACTCCCTGCAATACCCTTTTGGCTTCTCTTCTGGCTGTAAACTCAAACTAAACTGCAGCAACGACAACATCAAAATCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATACTCGTGAGCCTTCCGGTGAAGTGCAACCGCAGCATGGGAATCATAGACCCTCTTTTCGGTGTCAACTTTGCTCCTACGTTCAACAATAGCTTTTTGTTGCAGGGTTGCAAGTCCAATAAGCTCAATGGCTGCGGTATTCCCCCATCGAGTTTCGTTGGCCAGCACAACCCGGTGGAGGGGTGTGGCCGGAAAAACGAAAGTGAAGATTCTATTTGCTTCACGGAGCTGCAGCGTGATAGTTCGCGTGAAGATGTGCTCGCGCAGCGAGATTTGAAGGGAATTGGGTGTAGCTTCTTGTTTTCTGCTCTTGCTTATGATAAGAGTAAAGGGAAAGAGCTTTTGCTTCAATTACAGATGCTTGGGTTGGGGTGGTGGCTTAAAGGGCCGTGTAATTGTTCAAACAATGCATCCTGCACGAAGATCAAGCTTGCCAGACGAGATACAGGTTACCGGTGTCAATGCCATGAAGGTTTCGTCGGCGACGGTTTCAAAGACGGCGATGGTTGCCGGACTCCTCCTCAATGCAAAGCTTCAACACTAAGGTCTGGCGGATGTAGAAAAGCAATCAAAATTGGTGTCCTTGTTGGAGGGCTCATAATTGCGGCTACCCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACCAGGCGTCGTTCCTCTTGGCTGAGAAAACAATTGACAGTAAAGCGCCTATTACGAGAAGCTGCAGGGGACTCTACTGTTCCTCTATATCCCTACAAAGAAATAGAAAGGGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCTTTTGGCACAGTTTATGCTGGACACCTTCACAATGACGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAACAGTGTTGACCTAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGTTGCATAGAAGGGGGAGAGCAGATACTTGTGTATGAGTTTATGCCGAATGGAACACTGTCTCAACATTTGCAAAGAGAAAGGGGCGGAGCACTTCCTTGGACAGTAAGACTCACCATTGCTACTGAAACTGCTAATGCTATAGCATACCTTCATTCTGCAATTAACCCTCCAATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTATAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGCATGTCAGAAACATCACATATCTCAACCGCCCCACAGGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAGAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAGGTAGTTGATTTTTCGCGACCAAAAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTAGATGAAATTATTGACCCCTTCCTTGATCCGCATAGGGATGCTTGGACACTCTATTCTGTGCACAAGGTGTCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAACTTATCAGACGCAGTGAGTGGGAAAATTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTGTGTTCATCCCCTCGAATAAGAAGAGAGAATTCAGTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGATATTGATTGTTCCACCCAAGACTGAAATGTTTTTGCAATCAATGAAGGAAGTGAAGGACAGCTCTCCTGTATCTGTGCATGATGCTTGGCTAAGTGGAACTAGCTCACCTTCAACAATTGCTATCAGTGATGGAAGGAGGATGCCTTTGATATTTGCTAACGGTGCTTCAATAGAAGTTATCCGAGTCAGTGAGCTAATAAGTGACATTACACCAAACCTGGTTTTCATTTGTGTTTTATGTCATGGTTCCGATTCCTACCGTGTCCCTTTTATATCTTGTCCCCTTTTGAGTGTAAGCCAGAAAAGTTTAGTAAAGGGAAAGGCTCAGAGTTAG 2295 0.4532 MFHYNTKLALAFTIFVFCSTIAQTNTNCTRSCGQHSLQYPFGFSSGCKLKLNCSNDNIKIKIGEFEVQNITSDSILVSLPVKCNRSMGIIDPLFGVNFAPTFNNSFLLQGCKSNKLNGCGIPPSSFVGQHNPVEGCGRKNESEDSICFTELQRDSSREDVLAQRDLKGIGCSFLFSALAYDKSKGKELLLQLQMLGLGWWLKGPCNCSNNASCTKIKLARRDTGYRCQCHEGFVGDGFKDGDGCRTPPQCKASTLRSGGCRKAIKIGVLVGGLIIAATLVVALSLLCYFTRRRSSWLRKQLTVKRLLREAAGDSTVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDLVINEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEFMPNGTLSQHLQRERGGALPWTVRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFSRPKSEINLAALAVERIRRGCLDEIIDPFLDPHRDAWTLYSVHKVSELAFRCLAFHSDMRPTMIEVAEELELIRRSEWENLEETICTASSVGSVCSSPRIRRENSVVGVSFERVAGQGSEILIVPPKTEMFLQSMKEVKDSSPVSVHDAWLSGTSSPSTIAISDGRRMPLIFANGASIEVIRVSELISDITPNLVFICVLCHGSDSYRVPFISCPLLSVSQKSLVKGKAQS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00532 764 FunFam Wall-associated receptor kinase-like 20 407 616 - -
Phco8g00532 764 Gene3D Transferase(Phosphotransferase) domain 1 407 625 - -
Phco8g00532 764 SUPERFAMILY Protein kinase-like (PK-like) 314 606 IPR011009 -
Phco8g00532 764 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00532 764 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 687 IPR044652 GO:0004672
Phco8g00532 764 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Phco8g00532 764 Pfam Wall-associated receptor kinase galacturonan-binding 28 75 IPR025287 GO:0030247
Phco8g00532 764 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Phco8g00532 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Phco8g00532 764 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00532 764 FunFam Wall-associated receptor kinase-like 14 298 406 - -
Phco8g00532 764 Pfam Protein kinase domain 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00532 764 Gene3D Laminin 205 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00532 Phco-Chr8 5246699 5250763 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Phco8g00532 Pkinase 9.6e-44 CL0016