Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00516 ATGGGAATAGCAACACCATCTTCTTCGCTGCCTTCTATTATCTCTCACTCTAAGACACACCAGCAACACCATTCGAATTCTATGTCCCAAGATTACCACCACCACCAAGGAATCTTCAGCTTCCCCAATGGGTTCGAGAGATCGGCTACAACGATGAGTCACCAAGACCCTCACCAACAACAGCAGCAACAGCACCAGCAGATTCGTAGGGACAAAGTGAGGGTGCAAGGCTTCGAGCCACCACAAACTTTGGTCCCCATAGAGGAAGAAGAACCGGGAAGCCTCCCGGTGTACGAAACTGCGGGGATGTTATCGGAGATGTTCACTTTCCCTCCCGGCGCCGCCACAGAATTATTGGAGCAACAGCAACAGCAGCCACAGCAGCAACAGCCAATGACGACGACGTTTCGGTCGTCGGCCAGAGCAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATGGCAGTGTCAATAGCCGTGACAGTAGCAGCAGCAGCATAGTTCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCTCCTCCTTCTTCCACACTCCACATGTTACTTCCCACTTTTCCTCCGGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACTGTTGTGGAAGGCCCCGGTCACGGCCAAGGTCTTTCCTTATCCTTGTCCTCCTCCTTAGAAGCGGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGATTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCACCAGGGGCATGTTGGCTTTGCAGCATCATCGTCCACCTCATCCTTAGGTGTTGTCAATGCCTTGAGGAATTCAAAGTATATTAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCATGGAGGTAGTGGCGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTAGATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTAATGGGTTTTGGTTCTGCGGTTCCATACACGGCACTTGCACAGAAAGCAATGTCTCGTCACTTTAGGTGTCTAAAGGATGCCATAACAGCGCAACTGAAGCACAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGTTGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGATTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTAGATTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGACGAGAGAGAGAGGAACCAAAGCAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACACCCTCCACCACGGCTTCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCTACAGCGACCACACCACCAACCGCCAAAAGATCCGACACCGAAAGCGACCCTTCACTCGCCCCAATAAATAACAACAGGCCACAGGGAGCCTTCTCGGAAACACAGCCCAACTCCTCCACCACCGCCACCGCCTCAGAGGTGGCGCCTCCCTCGGAGCTTTCCCGGTCGATGGGGGCTGATGACTCGTGCCGGCACGGTAGCCTCGTTGTGACGGAGTTTGGGACCGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCCGGTGACGTGTCACTTACACTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2346 0.5226 MGIATPSSSLPSIISHSKTHQQHHSNSMSQDYHHHQGIFSFPNGFERSATTMSHQDPHQQQQQQHQQIRRDKVRVQGFEPPQTLVPIEEEEPGSLPVYETAGMLSEMFTFPPGAATELLEQQQQQPQQQQPMTTTFRSSARAVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHGSVNSRDSSSSSIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNHGGSGGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEDERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPQGAFSETQPNSSTTATASEVAPPSELSRSMGADDSCRHGSLVVTEFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00516 781 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 194 629 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 662 709 - -
Phco8g00516 781 FunFam BEL1-like homeodomain protein 4 545 607 - -
Phco8g00516 781 Coils Coil 608 628 - -
Phco8g00516 781 Gene3D - 545 607 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 119 207 - -
Phco8g00516 781 CDD homeodomain 542 603 IPR001356 GO:0003677
Phco8g00516 781 SMART HOX_1 542 606 IPR001356 GO:0003677
Phco8g00516 781 Pfam Homeobox KN domain 559 598 IPR008422 GO:0003677|GO:0006355
Phco8g00516 781 MobiDBLite consensus disorder prediction 385 414 - -
Phco8g00516 781 Pfam Associated with HOX 356 489 IPR006563 -
Phco8g00516 781 ProSiteProfiles 'Homeobox' domain profile. 539 602 IPR001356 GO:0003677
Phco8g00516 781 MobiDBLite consensus disorder prediction 647 661 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 385 421 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 43 64 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 188 202 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 1 36 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 1 68 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 119 142 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 613 720 - -
Phco8g00516 781 SUPERFAMILY Homeodomain-like 544 609 IPR009057 -
Phco8g00516 781 SMART prehox3 350 490 IPR006563 -
Phco8g00516 781 MobiDBLite consensus disorder prediction 628 646 - -
Phco8g00516 781 MobiDBLite consensus disorder prediction 613 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00516 Phco-Chr8 5089065 5095969 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco8g00516 POX 2.5e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00516 8 5089065 5095969 Phco8g00516 8 5089065 5095969 ECH
Phco8g00516 8 5089065 5095969 Phco4g01040 4 8335364 8342042 ECH
Phco4g01040 4 8335364 8342042 Phco8g00516 8 5089065 5095969 PCT