Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00514 ATGGGTTGGTTTACAAAATTGCTCAAAGGATCCAACCGTAAATATTCAGAAGGAAGATATCATGGGAAATATGGAGATGACAGATATTCAGAGAATCATGATAACTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGAAGATCCGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGATGAGGAAGACATATGTGTTGGTGAAGTTCAGCAAGATGAAGATGACCGTCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAAGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCCATCTGACACTGATTCTTTATTTCAACCTTTTGCGCACTTATTCCCACCTGTATACAGAACCTGTGCTGGCTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCTGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAATAACTTTATCCCACCAAACTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGAGATGGTACTCCTCGTTGTTGTAGCTGCCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCATCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAAGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCAACTATTTTAAGGAGGCCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGACTGATCCGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGGTAGAATCGGAGATCTATTCCAGCACTGGGAATGAAGGAGCATCATCATCATCATCTTCTTCTTCCTCATCCTCTTCGTCACCTTCGTCCTCTTCATCATCTAAGAAGGGTAAACGTTCTGATTTTGAGAAGAAACTTGGTGAATATTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTACGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1590 0.4176 MGWFTKLLKGSNRKYSEGRYHGKYGDDRYSENHDNSADDLTEIEKEEIDRAIALSLSEEDPKGKKVIEDDSESEDDELCPLDDEEDICVGEVQQDEDDRHAQIQQDEDKNLDEFQLEEDEQLAKAIQESLSISSPPPSDTDSLFQPFAHLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCNNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWVESEIYSSTGNEGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00514 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Phco8g00514 529 CDD LIM_DA1 158 210 - -
Phco8g00514 529 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Phco8g00514 529 FunFam Protein DA1-related 1 152 211 - -
Phco8g00514 529 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Phco8g00514 529 Gene3D Cysteine Rich Protein 154 215 - -
Phco8g00514 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Phco8g00514 529 MobiDBLite consensus disorder prediction 54 77 - -
Phco8g00514 529 Pfam LIM domain 158 212 IPR001781 -
Phco8g00514 529 SMART lim_4 157 209 IPR001781 -
Phco8g00514 529 MobiDBLite consensus disorder prediction 15 36 - -
Phco8g00514 529 Pfam Protein DA1 307 524 IPR022087 -
Phco8g00514 529 MobiDBLite consensus disorder prediction 447 476 - -
Phco8g00514 529 MobiDBLite consensus disorder prediction 54 69 - -
Phco8g00514 529 MobiDBLite consensus disorder prediction 447 471 - -
Phco8g00514 529 SMART uim 117 136 IPR003903 -
Phco8g00514 529 SMART uim 43 62 IPR003903 -
Phco8g00514 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Phco8g00514 529 PANTHER PROTEIN DA1-RELATED 2 3 529 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00514 Phco-Chr8 5046116 5050320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco8g00514 DA1-like 3.2e-105 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00514 8 5046116 5050320 Phco8g00514 8 5046116 5050320 ECH
Phco8g00514 8 5046116 5050320 Phco4g01039 4 8309297 8314521 ECH
Phco4g01039 4 8309297 8314521 Phco8g00514 8 5046116 5050320 PCT