Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00504 ATGAATCATGGAGCTGTTGAAGGCCATATGATGCTCTTCTCTCACCAATATCCTGCTGCATTCACTCAACTAACTCCTCCTCAACAAGCCAAGCCAAGACGCAAGAGAAACAAAAATGGAGTTGTGGGCTCCACCAAGAAGAGAAAGCTCAGTGCTGAGCAAGTTAGTCTTCTTGAGAAAAATTTCTGCAATCAACATAAACTTCAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACTAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACCCTTCTCCAGAAATGCCACCTTCAGACTCGGGTGTTGAATTTGGAGGAGCGGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGCTACAAGAGCGTGGTGAAAGAGCCCCAAGCAAACACTTAGTGGAAGCTGTGAACCCACCATTTCTTGGAGAGTTTAGGGCGGAAGACTATGATTATGCTGATGTCTTTTACATTCCGGAGACTCATTACATCAATGGAATGGAGTGGATTAATTTCTACATGTGA 597 0.4372 MNHGAVEGHMMLFSHQYPAAFTQLTPPQQAKPRRKRNKNGVVGSTKKRKLSAEQVSLLEKNFCNQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTLLQKCHLQTRVLNLEERLLEAKKEIQQLQERGERAPSKHLVEAVNPPFLGEFRAEDYDYADVFYIPETHYINGMEWINFYM 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00504 198 CDD homeodomain 46 102 IPR001356 GO:0003677
Phco8g00504 198 ProSiteProfiles 'Homeobox' domain profile. 41 101 IPR001356 GO:0003677
Phco8g00504 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 149 IPR045224 GO:0003700
Phco8g00504 198 SMART HOX_1 44 105 IPR001356 GO:0003677
Phco8g00504 198 MobiDBLite consensus disorder prediction 24 48 - -
Phco8g00504 198 Pfam Homeodomain 46 99 IPR001356 GO:0003677
Phco8g00504 198 SUPERFAMILY Homeodomain-like 45 109 IPR009057 -
Phco8g00504 198 Coils Coil 128 148 - -
Phco8g00504 198 Gene3D - 37 111 - -
Phco8g00504 198 ProSitePatterns 'Homeobox' domain signature. 76 99 IPR017970 GO:0000981|GO:0006355
Phco8g00504 198 FunFam homeobox-leucine zipper protein ATHB-40 40 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00504 Phco-Chr8 4921039 4922245 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco8g00504 Homeodomain 2.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00504 8 4921039 4922245 Phco8g00504 8 4921039 4922245 ECH
Phco4g01012 4 8014695 8016509 Phco8g00504 8 4921039 4922245 PCT