Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00502 ATGGGGGCTGGGGAAGAAAGTACAACAAAATCTTCTAAGTCATCTTCATCAGTTCAGGAGACACCAACAGTGCCTGCATATCCTGATTGGTCAAGCTCCATGCAGGCCTATTATGCTCCTGGAGCTGCTCCACCTCCCTTTTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATTTATGGGGAAGCCAGCATCCTTTGATGCCGCCATATGGAACTCCTGTCCCATATCCAGCTTTATATCCTCCTGGGAGTATCTATGCTCATCCAAGCATGGCAGTGACCCCGAGTGTTGTCCAGCAAAGTACGGAGATTGAAGGGAAGGGAGCTGATGGAAAGGATCGAGACTCGTCCAAAAAATTGAAAGGAACTTCTGCAAATGCAGGTTCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATGTCGCAAAGTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGTGATGAGAATAATAACCAACAGGAATCAGCTACAAACAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGGAGCCAATGCTCAGAACAATTCTGCGGGTGCCATTTCTCAATCTTCTATGCCTGGAAAGCCTGTTGTCTCAATGCCAGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCACCATCTGGTGGTGGCGAAGCTGCAAAAATGAGACATAATCAATCTGGTGCCCCAGGAGTTGTTGCCCTTGGTGAACAATGGATACAAGATGAACGTGAACTGAAAAGACAGAAGAGAAAACAGTCGAACAGAGAGTCAGCTAGGAGGTCAAGGTTACGCAAGCAGGCTGAGTGCGAAGACTTACAAAAGAGGGTGGAGACACTGGGAAGTGAGAATCGAACACTCAGAGAAGAGCTTCAGAGACTTTCAGAAGAATGCGAGAAGCTTACATCTGAAAATAGTTCAATCAAGGAAGAATTGGAACGGATGTGTGGGCCAGAAGCAGTTGCTAACCTTGGATGA 1017 0.468 MGAGEESTTKSSKSSSSVQETPTVPAYPDWSSSMQAYYAPGAAPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYPALYPPGSIYAHPSMAVTPSVVQQSTEIEGKGADGKDRDSSKKLKGTSANAGSKAGESGKAGSGSGNDGMSQSGESGSEGSSNASDENNNQQESATNKKGSFDLMLVDGANAQNNSAGAISQSSMPGKPVVSMPATNLNIGMDLWNAPSGGGEAAKMRHNQSGAPGVVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLGSENRTLREELQRLSEECEKLTSENSSIKEELERMCGPEAVANLG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00502 338 CDD bZIP_plant_GBF1 261 311 IPR045314 GO:0003700|GO:0006355
Phco8g00502 338 MobiDBLite consensus disorder prediction 310 338 - -
Phco8g00502 338 Pfam bZIP transcription factor 256 318 IPR004827 GO:0003700|GO:0006355
Phco8g00502 338 FunFam BZIP transcription factor 258 309 - -
Phco8g00502 338 Gene3D - 259 313 - -
Phco8g00502 338 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00502 338 SUPERFAMILY Leucine zipper domain 259 315 IPR046347 GO:0003700|GO:0006355
Phco8g00502 338 MobiDBLite consensus disorder prediction 258 282 - -
Phco8g00502 338 SMART brlzneu 256 320 IPR004827 GO:0003700|GO:0006355
Phco8g00502 338 Coils Coil 269 324 - -
Phco8g00502 338 MobiDBLite consensus disorder prediction 142 177 - -
Phco8g00502 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 263 278 IPR004827 GO:0003700|GO:0006355
Phco8g00502 338 MobiDBLite consensus disorder prediction 96 187 - -
Phco8g00502 338 MobiDBLite consensus disorder prediction 310 329 - -
Phco8g00502 338 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Phco8g00502 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 258 321 IPR004827 GO:0003700|GO:0006355
Phco8g00502 338 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 334 IPR044827 GO:0003700|GO:0006355|GO:0043565
Phco8g00502 338 MobiDBLite consensus disorder prediction 108 122 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco8g00502 MFMR 2.9e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00502 8 4883341 4886139 Phco8g00502 8 4883341 4886139 ECH