Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00499 ATGACGGTTGATTTGGATAACGTTTCCACAGCGTCAGGGGAAGCAAGCATCTCTTCCTCTGGCAATCAAACAAAACCAACTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTTTGTCGCCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGATTTCAGAGGGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCAGCGTGCGTGCACCACGACCCTTCTAGAGCCTTGGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACTGTGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTCTGCGGCAATAGAGAGTATAAGTGCGATTGCGGAACCATTTTCTCCAGGAGGGATAGCTTCATTACTCATAGAGCGTTTTGCGATGCGTTGGCGAAGGAGAGTGTGAGATCTCACACTGATGTTACCAAGGCTAATGAGGAAAGTGATTCAAAGGTCTTAACCGACTCACAGCCGCCGGAGGTGGCGGCGGCTACAGCCACCAGCCCTGCGCAGTCAAACAGTGCCATATCTTCTGGTGTGCAGACGCAGAACCCAGAGTTGCCAGAAAATAATCTCCCACAAGTCACTGAGGAGCAACAAGCTATTACTGCTATAAGTGGGAACTGTGGCAGCAATAGCAGTACCAATTGCTCAATAAGCAATGGTGGTGCTGCAAGTAATAGCAACAGTAGTAGTATGTTTGCAAGTTTGTTTGCTTCTTCAACATCGTCTGGGACTCTACAGTCTCAAAAACCAGCATTCAGTGACTTAGTTAGAGCCATGGGGCCTCGAGATCACCATGCAGACATCTCAGCTCCCTCTTCATCTGAGGCCATATCTCTTTGCCTCTCCACCAGTAATGCCTCACCAATATTTGCAACAGGAGGGCCGGAGCACCGGCAGTATGCCTCGCCTCCACAACCAGCCATGTCAGCCACAGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCAGCCACAAATGACTCTCTGCTTCGCGGTTTTGGCATTGTGTCGTCATCTTCAGCTGCAACTTCATCAGGGCAGCAAAATGGGCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGGCTCGGTTCCTGCAGCGCTTGGACTTAGTCTTCCATGTGATGGTGATTCTGGACTGAACGAATTGATGATGGGGACACCCTCAATGTTTGGTCCTAAACACACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTACTGCTGCAGCAGCAACCTTTGGTAATGGGGAGTTTTCTGGCAAAGATATTGGAAGGAGGAGCTCTTGA 1515 0.505 MTVDLDNVSTASGEASISSSGNQTKPTPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHCEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTIFSRRDSFITHRAFCDALAKESVRSHTDVTKANEESDSKVLTDSQPPEVAAATATSPAQSNSAISSGVQTQNPELPENNLPQVTEEQQAITAISGNCGSNSSTNCSISNGGAASNSNSSSMFASLFASSTSSGTLQSQKPAFSDLVRAMGPRDHHADISAPSSSEAISLCLSTSNASPIFATGGPEHRQYASPPQPAMSATALLQKAAQMGAAATNDSLLRGFGIVSSSSAATSSGQQNGLQWGQPQLESESGSVPAALGLSLPCDGDSGLNELMMGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVTAAAATFGNGEFSGKDIGRRSS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00499 504 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Phco8g00499 504 FunFam protein indeterminate-domain 12-like 37 105 - -
Phco8g00499 504 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Phco8g00499 504 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00499 504 MobiDBLite consensus disorder prediction 206 245 - -
Phco8g00499 504 MobiDBLite consensus disorder prediction 193 245 - -
Phco8g00499 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 466 IPR031140 -
Phco8g00499 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Phco8g00499 504 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Phco8g00499 504 Gene3D Classic Zinc Finger 38 104 - -
Phco8g00499 504 SMART c2h2final6 134 154 IPR013087 -
Phco8g00499 504 SMART c2h2final6 99 129 IPR013087 -
Phco8g00499 504 SMART c2h2final6 58 80 IPR013087 -
Phco8g00499 504 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00499 Phco-Chr8 4755389 4757587 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco8g00499 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00499 8 4755389 4757587 Phco8g00499 8 4755389 4757587 ECH
Phco8g00499 8 4755389 4757587 Phco4g01003 4 7944611 7946957 ECH
Phco4g01003 4 7944611 7946957 Phco8g00499 8 4755389 4757587 PCT