Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00493 ATGTCTTCCCCTAATAAGAAATCTGCTCCCCATAACAACACACCCGATGACGCCACCCCCGATGACGCCACCCCCGATAATGCCACTCCCGACAATGCCGTACCGGACAATGCCACTCCCGACAATGCCACACCCGACAATGCCACACCCGACAATGCCACACCCGACAATGCCACGCCCGACAATGCCACGCCCAACAATGCCACGCCCGATAATTCAAACGGATCACATAAGGGTTCCTCATCGTCGTCCACTCCTTCTGCCAAAGAGCCGCACAAAGCGCTGTCGCATGAAAGGATGTCGAGTACAGAGAAAGACAATGGTGGCACCGATAAAGCAGCATTGGGAGCTGGGATTGGAGTTGGGTTTGTCCTTCTCGTGTTGATCATTGTGTGTTTTATTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAAGAAGTACTACTACGCATCTCCTTCTAAAGGAAAAGGCAATCATTACAACACTGGGCAACAATCTCTCCCTCATTGGCAACAAGGACCGGGTCCTCAAGGGAGTGAACATGTCGTGAGGGTTCAACAACAAGGGATGGGGATGCAGATGGGAATGGGGATGCAGCTGGGAATGGGAATGGGAATGGGTCCTCCTAGTGGTGGTGGTGGTGGTGGCTGGGGTACATCCCATCCCCAAATGAGCAGTGGTGATATGAGCTCTAATTACTCAGTGGGAATGGGTTCCACATCGCCAGGCCTTTCTCTCACACTCAAGGGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGATTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGCTATGTCCATAAGGGAGTTTTACCAAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATAGCATTTGTGGAGGCCAAAGAATGTTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGAAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGCATTGCAATGGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGCCCTCGCATTATCCATCGTGACATTAAAGCTTCTAACGTTCTTCTAGATGATAGCTTTGAAGCAAAGGTGTCTGATTTTGGACTCGCAAAGTTGACCTCTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAAAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGGCCTGTAGATTCGACAAATGTCATGGAGGACAGTTTAGTGGATTGGGCTCGACCACTGCTGAATAAAGGTTTGGAGGATGGCAACTTTGGAGCGTTGGTGGATCCATTTTTGGAAGGCAACTACAATACCCAGGAAATGACAAGAATGGCAGCTTGCGCAGCTGCAAGCATTCGTCATTCTGCTAGGAAGCGTTCAAAAATGAGCCAGATTGTGAGAGCGCTGGAAGGAGATGTCTCATTGGAAGACTTGAAAGAAGGAACGAAACTTGCAGGGAATGGAAATAACAGCAGTGCTTACATTTCTTCATCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGATTAAGTTCAGACAGGCAATAATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATGGCTTATCATTAG 1824 0.4748 MSSPNKKSAPHNNTPDDATPDDATPDNATPDNAVPDNATPDNATPDNATPDNATPDNATPDNATPNNATPDNSNGSHKGSSSSSTPSAKEPHKALSHERMSSTEKDNGGTDKAALGAGIGVGFVLLVLIIVCFIWCCRRKKRKQKKYYYASPSKGKGNHYNTGQQSLPHWQQGPGPQGSEHVVRVQQQGMGMQMGMGMQLGMGMGMGPPSGGGGGGWGTSHPQMSSGDMSSNYSVGMGSTSPGLSLTLKGGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAMGSAKGLAYLHEDCSPRIIHRDIKASNVLLDDSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDSTNVMEDSLVDWARPLLNKGLEDGNFGALVDPFLEGNYNTQEMTRMAACAAASIRHSARKRSKMSQIVRALEGDVSLEDLKEGTKLAGNGNNSSAYISSSGSSEYDTMQYNADMIKFRQAIMSSQEFNDSGELSSKEMAYH 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00493 607 MobiDBLite consensus disorder prediction 1 20 - -
Phco8g00493 607 MobiDBLite consensus disorder prediction 1 108 - -
Phco8g00493 607 Pfam Protein tyrosine and serine/threonine kinase 268 469 IPR001245 GO:0004672|GO:0006468
Phco8g00493 607 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
Phco8g00493 607 FunFam Proline-rich receptor-like protein kinase PERK1 341 548 - -
Phco8g00493 607 ProSiteProfiles Protein kinase domain profile. 265 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00493 607 SMART serkin_6 265 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00493 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Phco8g00493 607 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 123 586 IPR047117 -
Phco8g00493 607 FunFam proline-rich receptor-like protein kinase PERK1 243 340 - -
Phco8g00493 607 MobiDBLite consensus disorder prediction 30 90 - -
Phco8g00493 607 MobiDBLite consensus disorder prediction 91 106 - -
Phco8g00493 607 SUPERFAMILY Protein kinase-like (PK-like) 245 537 IPR011009 -
Phco8g00493 607 MobiDBLite consensus disorder prediction 150 179 - -
Phco8g00493 607 MobiDBLite consensus disorder prediction 155 173 - -
Phco8g00493 607 Gene3D Transferase(Phosphotransferase) domain 1 341 552 - -
Phco8g00493 607 Gene3D Phosphorylase Kinase; domain 1 239 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00493 Phco-Chr8 4697007 4700443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco8g00493 PK_Tyr_Ser-Thr 1.6e-45 CL0016