Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00481 ATGATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCAGCATGTTCCACAGTGAAACAAACTCCTACTCGATGCTCTTTTCTATGCCCAACACCCACGGTCCCTATGATGATTACGAACACGACATGTATTCCTCCTACACGCCCTCTCCTTCTTCCGTGGACTGCACGCTCTCCCTCGGAACCCCTTCCACGCGTTTCACTGAAGGCGAGGAGCTACGAAACCGCCACGAATCTCGCTCTTCCGTCACCAACTTCTGCTGGGACTTGCTACAATCCAAACACACCACGCAATCTCAAACCAATAAATCCACCAGAGGAACCAATGGCGGCTCCAACAACGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGTGATACCACTTCCACTCCCCTCTGGAGAAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATCCGATATAAAAAGGAAGAGAGAAGAGCAACAGCTGCCGCCGCCACGTCTGCGGCAGTTCCCAGCAGCGTAATGGAATCGTCGCACTCTTACGGCAACCAAAGCAGTTCGTGGTACGCACACTCGCAGATGGGTAACGAGTTACGTTTCATGGAGGATTCTGACGATAGAGATTCGGACAATGGCATTCTCTTCTCATGGAACCTTAACGTTCCAGACCGAACGAGCCTCGTGCACGACTTCAGGAGATGA 714 0.5336 MMHRCCGNSQGHVMGTCTCSMFHSETNSYSMLFSMPNTHGPYDDYEHDMYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHESRSSVTNFCWDLLQSKHTTQSQTNKSTRGTNGGSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRATAAAATSAAVPSSVMESSHSYGNQSSSWYAHSQMGNELRFMEDSDDRDSDNGILFSWNLNVPDRTSLVHDFRR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00481 237 MobiDBLite consensus disorder prediction 103 122 - -
Phco8g00481 237 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Phco8g00481 237 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Phco8g00481 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 164 - -
Phco8g00481 237 MobiDBLite consensus disorder prediction 103 121 - -
Phco8g00481 237 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
Phco8g00481 237 Gene3D - 124 185 IPR013088 GO:0006355|GO:0008270
Phco8g00481 237 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Phco8g00481 237 PANTHER GATA TRANSCRIPTION FACTOR 18 11 236 IPR044272 GO:0003700|GO:0009908
Phco8g00481 237 SMART GATA_3 122 175 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00481 Phco-Chr8 4568179 4569377 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco8g00481 GATA 6.5e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00481 8 4568179 4569377 Phco8g00481 8 4568179 4569377 ECH
Phco4g00969 4 7645532 7646464 Phco8g00481 8 4568179 4569377 PCT