Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00478 ATGGAGAACCAACATGACCTCTTGTCGGTTGTTCTGCAAGACAAAACTTGCAGTGTAGTCATCACTCTCCGAAACAACGCCTTCTATGCCCTCTTATTCCCATCTCATAAATCAACATTCAGTTCCCACTTGTCTCTCTCTCTCTCTCTCTCTCTTCTCAAGGTTTTGCTGGTGCAATTAAGCTTCCTGCACTTCAAATCTTTACTCTGGTTTAGCTGCCAAGTTGTGTCTTACCTGAGGCTCCCTAGGGACCCAGTTGACAGATTTAGCACACAGAACGTCAGTATCAAGATGAGCACAGGAAAGAACATTGTTGTTGATTTGATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCCCCCATACAAATTCATCTTCTTCCAAGCTATCGTCACTAATAGGGGAAAGAAGTGACCAACCTCCTCAACCTCACATATTGGTTTTCAGTGATCCACCCCAAACAAATTCACATCATCACCATCGTCTCACCCCCCTTAATTCTCTTCCACCAAACCCCCTTCAACTTCCACACCCTCACAGACCCAGAAGAGATCTAGATCCAACTGCTATTTCTCCTCCTATCATAACCACCTCCAGAACACAACCACACTCAACCGGAACTTTCACAGCAACAGTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGTCATGTCACAGATGGGTGTGGAGAGTTTATGCCAAGTGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAGTCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCACAATCTCATCTTCAGTTACCTACACACCACCTTCACGGGGTGGTGGCCACCCCTTCAGGTGGGTCGGTTCAGCCCGCGATGCTGGGCTTTGGGGGTACCCCAACTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTGTTATCAGTGCAGCCACCCCTGTCATCATCCAAGAAGAGGTTCAGGACCAAGTTCTCACAGCAACAAAAGGATCAGATGATGGAGTTTGCTGATAAACTTGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 1290 0.462 MENQHDLLSVVLQDKTCSVVITLRNNAFYALLFPSHKSTFSSHLSLSLSLSLLKVLLVQLSFLHFKSLLWFSCQVVSYLRLPRDPVDRFSTQNVSIKMSTGKNIVVDLMDMREQDKVIEMPSTLGYNLPHTNSSSSKLSSLIGERSDQPPQPHILVFSDPPQTNSHHHHRLTPLNSLPPNPLQLPHPHRPRRDLDPTAISPPIITTSRTQPHSTGTFTATVRYRECLKNHAASMGGHVTDGCGEFMPSGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKTNRNIVIHSPQSHLQLPTHHLHGVVATPSGGSVQPAMLGFGGTPTESSSEDLNMFQTDDAGQLLSVQPPLSSSKKRFRTKFSQQQKDQMMEFADKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00478 429 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Phco8g00478 429 MobiDBLite consensus disorder prediction 200 214 - -
Phco8g00478 429 FunFam Zinc-finger homeodomain protein 2 356 426 - -
Phco8g00478 429 MobiDBLite consensus disorder prediction 157 171 - -
Phco8g00478 429 Pfam ZF-HD protein dimerisation region 221 273 IPR006456 -
Phco8g00478 429 MobiDBLite consensus disorder prediction 128 214 - -
Phco8g00478 429 Gene3D - 356 426 - -
Phco8g00478 429 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 223 272 IPR006456 -
Phco8g00478 429 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 209 422 - -
Phco8g00478 429 MobiDBLite consensus disorder prediction 128 146 - -
Phco8g00478 429 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 222 272 IPR006456 -
Phco8g00478 429 NCBIfam homeobox domain, ZF-HD class 365 422 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00478 Phco-Chr8 4522934 4524689 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco8g00478 ZF-HD_dimer 1.3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00478 8 4522934 4524689 Phco8g00478 8 4522934 4524689 ECH
Phco8g00478 8 4522934 4524689 Phco4g00964 4 7619103 7620116 ECH
Phco4g00964 4 7619103 7620116 Phco8g00478 8 4522934 4524689 PCT