LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g00472	ATGCGGTGGCCGGCGATTGATAGTGGAGTGGGAGTAAGACATGGAGGATTGGTAAGCTGTGAGAACATGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAACAGGAAGCACATCTAAGCGGGGTGCAGAAAGCAAGCTTCGACTCAGTCGAACAAAGTCGCATATTGCTCCAGATGTTATTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCAGAAGAATTGCTTTTTGACATAATCCAGAGGGTTGAAGAGAGTGAAACATCTTGGCCTGCCCGTGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCATGGAGGTCTATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCACGTGATTCTCCAATACAGTGCTTTATCAGGAGGAGCAAAGAAAGTTCTACATATCTGTTGTACTCTGGCCTGGTTCCATCAGAGAATGACAATAACAAGTTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCTCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATATATGACAGTCAACCTCCCCGTGATGCTGCAATTCAACCAAATTGTCAGTCTAATAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAATGTCCTTTGCACTAGAGGGCCAAGAAGAATGCATTGCGTCATGAACTCTATACCCATCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAGCAGCGACAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAACTTATCAGAGCCACCAATATCGAGCCATGGCTCAACTGAGCAATTAGCACTGAAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAAGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCACATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGTAAAGATATATTCACCATGGATTACCGTTATCCACTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGTAGCTTTGACACTAAACCAGCCTGCGAATGA	1308	0.4404	MRWPAIDSGVGVRHGGLVSCENMLRSIVRELKEMRDGTGSTSKRGAESKLRLSRTKSHIAPDVIATTFEFIQQGQWANLPEELLFDIIQRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRSKESSTYLLYSGLVPSENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIYDSQPPRDAAIQPNCQSNRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPISAIQEGGNAPTPTSFPQIFDEPFSPSPAATEKVPVPDLNSANLSEPPISSHGSTEQLALKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g00472	435	PRINTS	Tubby superfamily signature	392	411	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	413	435	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	363	379	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	191	207	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	207	231	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	256	283	IPR000007	-
	Phco8g00472	435	PRINTS	Tubby superfamily signature	345	362	IPR000007	-
	Phco8g00472	435	PANTHER	TUBBY-RELATED	30	433	-	-
	Phco8g00472	435	SUPERFAMILY	Tubby C-terminal domain-like	125	435	IPR025659	-
	Phco8g00472	435	Gene3D	Tubby Protein; Chain A	134	435	IPR025659	-
	Phco8g00472	435	Pfam	Tub family	137	430	IPR000007	-
	Phco8g00472	435	ProSitePatterns	Tub family signature 1.	363	376	IPR018066	-
	Phco8g00472	435	Pfam	F-box domain	76	123	IPR001810	GO:0005515
	Phco8g00472	435	SUPERFAMILY	F-box domain	72	119	IPR036047	GO:0005515
	Phco8g00472	435	ProSitePatterns	Tub family signature 2.	420	435	IPR018066	-
	Phco8g00472	435	Gene3D	-	70	122	-	-
	Phco8g00472	435	CDD	F-box_AtTLP-like	76	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g00472	Phco-Chr8	4460465	4468543	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Phco8g00472		Tub	6.6e-106	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g00472	8	4460465	4468543	Phco8g00472	8	4460465	4468543	ECH
	Phco8g00472	8	4460465	4468543	Phco4g00958	4	7567189	7569774	ECH
	Phco4g00958	4	7567189	7569774	Phco8g00472	8	4460465	4468543	PCT