Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00437 ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGGAAAGACATGTCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTGCGACGACTTCTTCGTCGACGACCTCCTCGACTTTTCGCTTCTCGAAAACGAAGAACCCGACCAACACAAACACAACCACCACTCAACCTCTGTCTCCCCCCACAACAACAACCACGATATTTACAATTGCAACCCTTCCTTTAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATATTCTCTTTCCTTCCCCGCAACCGTCTCACAGAGCCTCGCCGAGAAACCGCCGGAACCGGGAAACGCCGGTTTCACCTTTAAAACCCTTGTTCCGGCCAAGCCAAGAAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCAGGTCACCCTCGTCTTTCACCGAGACGTCATCTCCCTCCAGCCCTTTCTTAATTTGCGCCGCTGCGTCTAAAGACCACCACCCGGAGGATAAGAGGGCAAAGAAACGGGCGGCGCCGGACGGTGGCGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACTCCTCAGTGGCGAACTGGGCCGCTCGGGGCGAAGACCCTGTGCAATGCGTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGTCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCAGAAGAAGGAGGCGGAGCCTGGACCGGAGACTGGTTCGCCACCGTCGGTTCCCGGTTTTTGA 882 0.5488 MECLEAVLKSSFRKDMSLKLSPQAFPEDLNMQNVTSCDDFFVDDLLDFSLLENEEPDQHKHNHHSTSVSPHNNNHDIYNCNPSFNDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVSQSLAEKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTETSSPSSPFLICAAASKDHHPEDKRAKKRAAPDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAEPGPETGSPPSVPGF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00437 293 Gene3D - 204 278 IPR013088 GO:0006355|GO:0008270
Phco8g00437 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Phco8g00437 293 MobiDBLite consensus disorder prediction 187 212 - -
Phco8g00437 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Phco8g00437 293 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Phco8g00437 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 267 - -
Phco8g00437 293 CDD ZnF_GATA 210 258 IPR000679 GO:0006355|GO:0043565
Phco8g00437 293 PANTHER GATA TRANSCRIPTION FACTOR 27 288 - -
Phco8g00437 293 MobiDBLite consensus disorder prediction 270 293 - -
Phco8g00437 293 MobiDBLite consensus disorder prediction 187 206 - -
Phco8g00437 293 PIRSF Txn_fac_GATA_plant 4 287 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco8g00437 293 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
Phco8g00437 293 FunFam GATA transcription factor 197 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00437 Phco-Chr8 4012628 4013578 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco8g00437 GATA 3.9e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00437 8 4012628 4013578 Phco8g00437 8 4012628 4013578 ECH