Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00425 ATGGGGAGGGAAGATGGGAAAATGGGAAGATGGGAAAATGGGAAGATGGGAAGTGGGAATGTTGGAATAACCAACCCAACTCAAAACAACACACTCAAACCTTCCTCTCTTCTTCTTCCCTCGACTACCATGACTAAATTTCTCATCCTCCTCTTATTCTGCGCACGCTTCTTATCATGCGCCTACTGCGCCTCCGTCACCGAGATCCAAGCCTTGACGTCATTTAAGCTCAACCTTCACGACCCTCTCGGCACGCTTAACTCCTGGGACCCGTCAACGCCGTTAGCTCCCTGTGACTGGCGCGGCGTTTATTGCAAAAACGACAGAGTCACCGAGTTACGCCTGCCTCGCCTTCAACTCAGTGGCCAGATTGGTGACCGCATTTCTGACCTACGCATGCTTCGAAGGCTAAGCCTTCGCTCCAACTCCTTCAACGGCACCATTCCCCACTCCCTCTCCAAATGCACGCTTTTACGCGCCTTGTTCCTACAGTATAACGACCTCTCCGGCCAACTCCCTTCGGAGATTGGAAACCTCGCCTCTCTCCAGATTCTCAACGTCGCCGGCAACAACCTCTCCGGGAAAATCCCCACCGAACTTCCTCTTCTTCTCAAATACGTTGACCTCTCCGCCAACGCTTTCTCCGGCGAGATTCCGACCACCATCCCCGGTCTTTCCGAGCTTCAGCTTATCAACCTCTCCTACAACAAGTTCTCCGGCCAGATTCCGGCGCGCATTGGAGAGCTTCAGAATCTGCAATACCTTTGGCTCGATCACAATGTTCTCGACGGAACCTTACCTTCGTCTCTCGCGAATTGTTCCTCGCTCGTGCATTTGAGCGTCGAAGGGAACGCGCTCGCCGGGGTGTTACCGGCTGCGATTGCGGCTCTCCCGAACCTCCAGGTGTTGTCACTCGCGCAGAACAACTTCACCGGCACCGTTCCGGCTTCGGTTTTCTGCAACGTGTCGCTCAAAGCGCCGTCACTTCGCATCGTTCAGTTAGGGTTTAACCGTTTCACGGATTTCGCGTGGCCTCAAGCCGCCACGTGTCTCAGTGTTCTTGAGGTTTTGAATGTTCAGCAAAATAGCGTGCGCGGCATGTTTCCGCTGTGGTTAACGAACGTGACCACGCTGTCGGTTCTCGACATTTCTGGTAACGCACTTTCCGGCGAGGTTCCGCCGGAAATTGGAAGTCTCTGGAAATTGGTAGAGCTGAAGATGGCCAACAATTCGTTCTCAGGTGAGATTCCGCCGGAATTAGTAAAATGTAGGTCCCTGCGTGTTGTTGATTTCGAAGGAAACAGGTTTTCCGGTGTGGTTCCTTCGTTTATAGGAAATTTGACAGCGCTGAAGGTTCTCTCTCTTGGTGTGAACCATTTCTCTGGTTCTGTTCCGGTGAGTTTTGGTGGGCTCCATTCTCTTGAAACTATGAGTTTAAGGGGTAATAGATTGAATGGTACAATGCCAGAAGAAGTGATAAGGTTGAAGAATTTGACTGTGTTGGACCTCAGTGGAAACCAGTTTTCGGGTCATGTTTCTGGGGAAATTGGGAATCTGAGTAAATTAATGGTTCTGAATCTGAGTGGTAATGGCTTCTATGGAGAAATTCCTTCCACTTTGGGGAATCTTTTCAGGCTCACTACACTTGATTTGAGCAAACAAAATCTCTCCGGCAAATTGCCATATGAAATTTCGGGGCTTCCCAGTTTGCAGGTCATTGCTCTTCAAGAGAACAAGTTGTCTGGGGTGATCCCTGAAGGGTTTAGCAGCTTGACCAGTTTGAAATATGTGAACCTAAGCTCTAACGAGTTTTCTGGGCATGTTCCTAAGAGCTATGGCTTCCTCCGATCGTTGATTGTTCTTTCATTGTCTGATAACCGCATCATGGGAGTGATTCCCCCGGAAATTGGAAACTGCCCTGACATTGAAATTCTCGAGCTTAGATCAAATCACTTGGAGGGTCCCATTCCCACGGATCTCTCTGGCCTAGCCCATTTGAAAGTCCTTGATTTAGGTAAAAACAATTTAACTGGGGCTTTGCCTGAGGATATCTCCAAATGCTCAGAGTTAACAGTTGTGTTAGCAGATCACAACCAACTTTCGGGTGCTATACCAGGGTCATTGGCCAAGTTATCATACCTAACTATGCTGGATCTCTCGGCCAACAAATTGAGTGGCGAAATTCCCAGTAATCTAAACACCATCCCCGGTTTGGTGTACTTCAACGTCTCAGGCAACAACTTAGAAGGTGAGATTCCACCAATGTTGGGTTCTAAATTCAACAACTCCGCTGTATTTGCAGGCAACCAGAACTTGTGCGGGAAGCCATTGAATAGAAAGTGCCAAGAGACAGACAGTAGGGAGAGAAATAGGTTGATAGTGTTAATCATTATCATCGCGGTTGGAGGTTGCTTATTGGCTTTGTGTTGCTGCTTCTACATCACCAGCCTTCTGAGATGGCGCAGAAGGATTAAAGCAGCAGTGTCAGGGGAGAAGAAAAAGAGTCCAAGAACAAGTTCAGGAACAAGTCAAGGTCGAAGCAGCACTGACACAAACGGACCAAAACTCGTCATGTTCAACGCCAAAATCACACTCGCCGAAACAATCGAAGCAACGAGGCAATTCGACGAAGAAAGCGTGCTGAGCAGAACAAAACACGGTTTAGTATTCAAGGCCTGCTACAACGACGGAATGGTCCTTTCCATTCGCAAGCTACAAGACGGGTCACTAGACGAAAACATGTTCAGAAAAGAAGCCGAATCGATAGGAAGAATCAGGCACCGAAACCTAACCGTTCTCAGAGGCTACTATGCAGGCCCATCGGATGTTAGACTCCTGGTCTACGATTACATGCCCAATGGGAACCTCGCAACGTTGCTCCAAGAAGCATCACACCTAGACGGTCACGTTCTGAATTGGCCAATGCGACACCTCATTGCATTAGGAATAGCCCGTGGCATAGCGTTTCTACACCAATCCTCACTTGTCCACGGTGACATCAAACCCCAAAACGTGCTCTTTGATGCAGACTTCGAAGCCCATTTATCAGATTTCGGGTTGGACAAGTTAACACTTACCAACCCAGTTGAAGCCTCCACTTCAAGCACTGCTTCAGTTGGCACGTTGGGTTACGTGTCCCCAGAGGCTGTGCTAACAGGGGAACCCACGAAAGAGTGTGACGTGTACAGCTTCGGCATCGTTTTGCTGGAACTTCTCACTGGGAAGAGACCAGTGATGTTCACGCAGGATGAGGATATAGTGAAGTGGGTGAAGAAACAGTTACAGAACGGTCAAATTACGGAGCTACTAGAGCCTGGTTTGTTTGAACTTGACCCAGAGTCTTCGGAATGGGAAGAGTTCTTGCTGGGCGTGAAAGTTGGTCTGCTTTGCACAGCACCAGATCCTCTTGATCGACCAACCATGGCTGACATCGTGTTCATGCTCGAAGGTTGTCGTGTTGGACCCGATATTGCATCCTCCGCTGAACCCACGACGCAACCTTCTCCGGTGTAA 3513 0.4907 MGREDGKMGRWENGKMGSGNVGITNPTQNNTLKPSSLLLPSTTMTKFLILLLFCARFLSCAYCASVTEIQALTSFKLNLHDPLGTLNSWDPSTPLAPCDWRGVYCKNDRVTELRLPRLQLSGQIGDRISDLRMLRRLSLRSNSFNGTIPHSLSKCTLLRALFLQYNDLSGQLPSEIGNLASLQILNVAGNNLSGKIPTELPLLLKYVDLSANAFSGEIPTTIPGLSELQLINLSYNKFSGQIPARIGELQNLQYLWLDHNVLDGTLPSSLANCSSLVHLSVEGNALAGVLPAAIAALPNLQVLSLAQNNFTGTVPASVFCNVSLKAPSLRIVQLGFNRFTDFAWPQAATCLSVLEVLNVQQNSVRGMFPLWLTNVTTLSVLDISGNALSGEVPPEIGSLWKLVELKMANNSFSGEIPPELVKCRSLRVVDFEGNRFSGVVPSFIGNLTALKVLSLGVNHFSGSVPVSFGGLHSLETMSLRGNRLNGTMPEEVIRLKNLTVLDLSGNQFSGHVSGEIGNLSKLMVLNLSGNGFYGEIPSTLGNLFRLTTLDLSKQNLSGKLPYEISGLPSLQVIALQENKLSGVIPEGFSSLTSLKYVNLSSNEFSGHVPKSYGFLRSLIVLSLSDNRIMGVIPPEIGNCPDIEILELRSNHLEGPIPTDLSGLAHLKVLDLGKNNLTGALPEDISKCSELTVVLADHNQLSGAIPGSLAKLSYLTMLDLSANKLSGEIPSNLNTIPGLVYFNVSGNNLEGEIPPMLGSKFNNSAVFAGNQNLCGKPLNRKCQETDSRERNRLIVLIIIIAVGGCLLALCCCFYITSLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNAKITLAETIEATRQFDEESVLSRTKHGLVFKACYNDGMVLSIRKLQDGSLDENMFRKEAESIGRIRHRNLTVLRGYYAGPSDVRLLVYDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGIAFLHQSSLVHGDIKPQNVLFDADFEAHLSDFGLDKLTLTNPVEASTSSTASVGTLGYVSPEAVLTGEPTKECDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQNGQITELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIASSAEPTTQPSPV 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00425 1170 Gene3D Phosphorylase Kinase; domain 1 838 950 - -
Phco8g00425 1170 SUPERFAMILY Protein kinase-like (PK-like) 857 1155 IPR011009 -
Phco8g00425 1170 SMART LRR_typ_2 179 203 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 663 687 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 297 321 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 711 735 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 495 518 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 519 543 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 375 399 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 447 470 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 249 273 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 131 155 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 615 639 IPR003591 -
Phco8g00425 1170 SMART LRR_typ_2 567 590 IPR003591 -
Phco8g00425 1170 SUPERFAMILY RNI-like 404 760 - -
Phco8g00425 1170 FunFam Putative LRR receptor-like serine/threonine-protein kinase 838 950 - -
Phco8g00425 1170 FunFam Uncharacterized protein 297 509 - -
Phco8g00425 1170 SMART LRR_sd22_2 495 521 - -
Phco8g00425 1170 SMART LRR_sd22_2 297 324 - -
Phco8g00425 1170 SMART LRR_sd22_2 663 686 - -
Phco8g00425 1170 SMART LRR_sd22_2 711 734 - -
Phco8g00425 1170 SMART LRR_sd22_2 249 272 - -
Phco8g00425 1170 ProSiteProfiles Protein kinase domain profile. 875 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00425 1170 SMART serkin_6 875 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00425 1170 SUPERFAMILY L domain-like 65 393 - -
Phco8g00425 1170 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 62 589 - -
Phco8g00425 1170 MobiDBLite consensus disorder prediction 829 854 - -
Phco8g00425 1170 Pfam Leucine rich repeat 642 700 IPR001611 GO:0005515
Phco8g00425 1170 Pfam Leucine rich repeat 424 484 IPR001611 GO:0005515
Phco8g00425 1170 Pfam Leucine rich repeat 545 603 IPR001611 GO:0005515
Phco8g00425 1170 Pfam Leucine rich repeat 251 310 IPR001611 GO:0005515
Phco8g00425 1170 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 510 785 - -
Phco8g00425 1170 MobiDBLite consensus disorder prediction 833 854 - -
Phco8g00425 1170 MobiDBLite consensus disorder prediction 18 35 - -
Phco8g00425 1170 Gene3D Transferase(Phosphotransferase) domain 1 951 1159 - -
Phco8g00425 1170 FunFam Putative LRR receptor-like serine/threonine-protein kinase 66 201 - -
Phco8g00425 1170 Pfam Protein kinase domain 885 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00425 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Phco8g00425 1170 FunFam Inactive leucine-rich repeat receptor-like protein kinase 202 292 - -
Phco8g00425 1170 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 951 1156 - -
Phco8g00425 1170 Gene3D Ribonuclease Inhibitor 204 294 IPR032675 -
Phco8g00425 1170 Gene3D Ribonuclease Inhibitor 296 514 IPR032675 -
Phco8g00425 1170 Pfam Leucine rich repeat N-terminal domain 68 105 IPR013210 -
Phco8g00425 1170 Gene3D Ribonuclease Inhibitor 515 790 IPR032675 -
Phco8g00425 1170 Gene3D Ribonuclease Inhibitor 65 203 IPR032675 -
Phco8g00425 1170 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00425 Phco-Chr8 3847542 3851054 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Phco8g00425 Pkinase 2.7e-33 CL0016