Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00421 ATGATGGAGCCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAGTAGACCTATATCGTATTGAACCATGGGATCTGCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACGAGAACCAACAGAGCTACCATGGCAGGGTTCTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAAACTCTCGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCCTTCAGGAAGAGAACAAACGGCCAAACAAAGAGTATTGAAGGATGGGATCGAAGCTACATATACGATGAACAAGCATGTGGCGTCAACTCTTCGGTGAATCCTATGGACCTCATGTTAAGACAACCTCAGAGGAATCAAAATTCAGCTAAAAGTTTCTTGTACAAGCAAGAGATAGAAGCAGATAATAATTTGAGGTTCATGCATGCAGAAGGAGTGATGCAGCTTCCTCAGCTAGAAAGTCCTTCCATGCCATTACTGAAGAAGCAAACCGAAGTGTCCCTAATATCAGACAATATTAACAACGAAGATGGTTCCCCAAACGAATTATCCAACACAAAGAAAGTGACTGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGACATGAAATAGAAGGGATGTCAAGCTTTGCAACTCATCACACTGCCTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCGTTTTTTAATACAAGTTCATCAGACTGTGACATTGGGATATGTGTATTTGAAAAATGA 1017 0.4238 MMEPCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEVDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETLENGPPQEEGWVVCRAFRKRTNGQTKSIEGWDRSYIYDEQACGVNSSVNPMDLMLRQPQRNQNSAKSFLYKQEIEADNNLRFMHAEGVMQLPQLESPSMPLLKKQTEVSLISDNINNEDGSPNELSNTKKVTDWRALDKFVASQLSQEERHEIEGMSSFATHHTASDMALLLLQNTNERNKFNPFFNTSSSDCDIGICVFEK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00421 338 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Phco8g00421 338 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Phco8g00421 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 249 - -
Phco8g00421 338 FunFam NAC domain-containing protein 15 159 - -
Phco8g00421 338 SUPERFAMILY NAC domain 2 155 IPR036093 GO:0003677|GO:0006355
Phco8g00421 338 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00421 Phco-Chr8 3815293 3817979 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco8g00421 NAM 5.1e-38 No_clan