Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00419 ATGAAGCGAGCAAGGAAATCCAACCGGGTTTCGTGGGCTACTGGAGGGAACCTGTGTCAGGTAAAATTGTTTTTGTCTGACGATATCCCCTCAAAAGTAGGCCAACATTCGCAAGATCATCTTCAAGTAAAGACATCAATGCTAAATTCAAATTCCACTATAATTGATCCTAGTGATTTGCCCCCTGGTTTTGAAAGCAGTCATTTCCTAAAACAAACAAAGGTTGATTTCTCCAGCATTTCCCCGATAAAATGGGAATGCCCTCTGCCGTTTGTTGTCAGTCCTAAATGGTGTGTTGTAGCGGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCTTGCCCTTCTGTCTCTTTGGACGTAGAAGAGGAAGATTATGATGATGACGTAACTCCCCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTATGGATATTTTACCTGAAGTGGCAGTAGCTGGGAACCCTTTCCCTAATGTGCAGTCGGATAACCCTCTGCAATATATATCTGCTGAAACTTCCATTCGTTCAACCTCTAACGCCTTTTATACTGATACCTCGGATCCTGGTACAGGGATCCCCTTGGGTGGAGTATCTTTTGGTTTGGAAGCTGATTTGGCAGCTTCGGTTGTTGCAACCATTATGAGGAGTTCTGAGCAAGGGTCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCAAAAATACTCGACAAGTTGATTAATGAACATAGAACTGCAGCTACCACCATAAGTGCTTCAACAAGTACTGTGGATACCACTCCTGGTGTTAAGCCTGCCAGTCCAGTTCTGTTGTCTGCATCTGCTAATGTGAAAGCTTCTGGGGCTACACATCCAAGTGCAGTGGGTTCATTGGCTTTTGGGCTGAAAACTGCAAATTCATTAGAGTCAGTATTGAGTCCTACACCTGACAAGCCAGCCACTCTGTCAGTGCCTGCAATTCCATCAGTTTCACTGTTGTCTTCGGCTCATGATAATCCAGTTACTGCATCAGTTCCAATGTCTAGGCCTGTATCTGGTAAGCGAGTAACACCCTCAGTTTCATTGCTCACAAATACACCTGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAAGTGGGATTTCCCCTGCTTTAAATACTCAGCATCAACAAGATACAGCTCTGGCAACTGGGCCAAAGCGAGCCGCTGCAGTGGCGTCCATATGTTCTGGTGAATTAAGCACTGGTCCATTGCCATCTCTTACGAGGAACTTGCATGCTGTTGTGAATCCGGTGCAATCCACTGCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGTGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTAACCTTCAAGATATGAAACCGGTACATAACTTTAAAGAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTTCAATTGCCCCTATCAGCATGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCTTAGGGTCACAGAGTGCAAAAAGATTGAAATCTGGACCTTAG 1710 0.4368 MKRARKSNRVSWATGGNLCQVKLFLSDDIPSKVGQHSQDHLQVKTSMLNSNSTIIDPSDLPPGFESSHFLKQTKVDFSSISPIKWECPLPFVVSPKWCVVAGEESREKENQKLRENRVLEAVYPRLSAIPPCPSVSLDVEEEDYDDDVTPLIPIIPIEEEESMDILPEVAVAGNPFPNVQSDNPLQYISAETSIRSTSNAFYTDTSDPGTGIPLGGVSFGLEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKILDKLINEHRTAATTISASTSTVDTTPGVKPASPVLLSASANVKASGATHPSAVGSLAFGLKTANSLESVLSPTPDKPATLSVPAIPSVSLLSSAHDNPVTASVPMSRPVSGKRVTPSVSLLTNTPASHIPRSVSKQIHHVSSGISPALNTQHQQDTALATGPKRAAAVASICSGELSTGPLPSLTRNLHAVVNPVQSTASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNLQDMKPVHNFKEGEVKHKIQKPCIYFKSSKGCRNGFNCPYQHDVSAQWGAGNILGSQSAKRLKSGP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00419 569 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 567 - -
Phco8g00419 569 ProSiteProfiles Zinc finger C3H1-type profile. 521 548 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00419 Phco-Chr8 3786279 3792128 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g00419 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00419 8 3786279 3792128 Phco8g00419 8 3786279 3792128 ECH
Phco8g00419 8 3786279 3792128 Phco4g00877 4 6905115 6906903 ECH
Phco4g00877 4 6905115 6906903 Phco8g00419 8 3786279 3792128 PCT
Phco8g00419 8 3786279 3792128 Phco4g00878 4 6915631 6919455 PCT