Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00404 ATGGGAATTTGCTATTCCGCCACCAAGGTCAGCGTCTTCAACGGCACCCCTGTCACCGTCAAGAAAAATCTCAAGCGCGCCGCGATACCCGAAAAGAGGACGGCGGCGGTCAACACCGAACGGCACAAGGCAAGTGCGCGGCACGTGCCGTGCGGAAAGCGCACGGATTTTGGTTACCAGAAGGATTTCTATACGCGATATACGCTGGGCAAATTGCTGGGACACGGCCAATTCGGTTACACCTACGTAGGAATCGACAAAGCTAATGGCGATCGCGTCGCCGTTAAGAGGCTCGAGAAGAGTAAGATGGTTCAGCCTATAGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCGCTCACTGGCCACGAGAATGTGGTTCAGTTCTATGATGCTTTTGAAGATGATTCTTACGTGTATATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAAGAGAGTCGTTATTCCGAAAAAGATGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGCCATTTACATGGTTTGGTGCACCGAGACATGAAACCAGAAAATTTTCTTTTTAAATCACCTAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCGGATTTCATTAAACCTGGAAAGAAGTTTCATGATATAGTTGGTAGTGCTTACTATGTTGCACCTGAAGTATTAAAACGCAAGTCTGGCCCACAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGCTGAGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATTTTTAAGGAGGTTTTACGGAAGAAGCCTGATTTCCATCGGAAACCATGGACAACTATAAGTAATGCTGCAATAGATTTTGTGAAAAAATTACTGGTAAAGGATCCTCGGGCAAGGTTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCGGAGATTCCTATTGATATATCCGTTCTTAGCAACATGCGGCAATTTGTGAAATATAGTCGATTGAAACAATTTGCACTCAGGGCATTGGCTAGCACACTTAACGAAGAAGAGTTGGCTGATCTAAAAGATCAATTTGATGCTATAGATGTGGACAAAAATGGTTCTATTAGTTTGGAAGAGATGAGACAGGCTCTTGCGAAAGATCTTCCTTGGAAGTTGAAAGAACCACGAGTACTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGGCTAGTGGATTTTAGAGAGTTTGTAGCTGCTACATTACATGTGCATCAGTTGGAGGACGACTCTGATAAGTGGCAGCAACGGTCACAAGCTGCTTTTGAGAAATTTGACATAGATAAAGATGGCTATATTAGTCCAGAGGAACTTAAAATGCATACAGGCTTGAGAGGCTCCATTGATCCTTTGCTGGAGGAAGCTGATATTGACAAAGACGGAAAAATCAGCCTATCAGAATTCCGTAGACTTCTAAGGACTGCGAGCATGAGTTCTCAAAAGGTTTCAAGCCCAATTGTCCATAAGCGGAGAATCTAG 1584 0.4419 MGICYSATKVSVFNGTPVTVKKNLKRAAIPEKRTAAVNTERHKASARHVPCGKRTDFGYQKDFYTRYTLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVQPIAVEDVKREVKILKALTGHENVVQFYDAFEDDSYVYIVMELCEGGELLDRILAKKESRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLSGRRPFWDKTEDGIFKEVLRKKPDFHRKPWTTISNAAIDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKEPRVLEILQAIDSNTDGLVDFREFVAATLHVHQLEDDSDKWQQRSQAAFEKFDIDKDGYISPEELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMSSQKVSSPIVHKRRI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00404 527 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Phco8g00404 527 FunFam Calcium-dependent protein kinase 28 368 437 - -
Phco8g00404 527 Pfam EF-hand domain pair 374 436 IPR002048 GO:0005509
Phco8g00404 527 Pfam EF-hand domain pair 454 507 IPR002048 GO:0005509
Phco8g00404 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Phco8g00404 527 FunFam calcium-dependent protein kinase 28-like 153 346 - -
Phco8g00404 527 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Phco8g00404 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 500 - -
Phco8g00404 527 Gene3D - 349 506 - -
Phco8g00404 527 ProSiteProfiles EF-hand calcium-binding domain profile. 486 513 IPR002048 GO:0005509
Phco8g00404 527 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00404 527 SMART efh_1 482 510 IPR002048 GO:0005509
Phco8g00404 527 SMART efh_1 452 480 IPR002048 GO:0005509
Phco8g00404 527 SMART efh_1 411 439 IPR002048 GO:0005509
Phco8g00404 527 SMART efh_1 374 402 IPR002048 GO:0005509
Phco8g00404 527 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Phco8g00404 527 CDD STKc_CAMK 66 326 - -
Phco8g00404 527 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Phco8g00404 527 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Phco8g00404 527 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Phco8g00404 527 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00404 527 SUPERFAMILY Protein kinase-like (PK-like) 64 341 IPR011009 -
Phco8g00404 527 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Phco8g00404 527 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00404 527 SUPERFAMILY EF-hand 356 509 IPR011992 -
Phco8g00404 527 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Phco8g00404 527 Gene3D Transferase(Phosphotransferase) domain 1 153 348 - -
Phco8g00404 527 Gene3D - 368 437 - -
Phco8g00404 527 FunFam CDPK-related kinase 1 60 152 - -
Phco8g00404 527 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00404 Phco-Chr8 3692227 3702194 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco8g00404 Pkinase 9.6e-70 CL0016