Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00402 ATGGAGGCTGAGGCGCAAATCTCTCACCATTCAAGTACTCAATTTCAGCCAGAGCCTGTTGTCTCAGTTCAAAATGGGGATCCTGGTGTTTCCTCATATGTGGCAAATGCTGTTATCCCTCAGCAGCCAGCTACAAAAAAACCTACCAGACAGTGGGCTGCGTGGACTCGGCAAGAGGAGGAGAGTTTCTTCACTGCATTACGACAAGTTGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTCAGGCATTATTACTACCGGCTTGTGAGGCGGATGAACAAACTTCTTGGTCCAGGACTATGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAACCTCGGAGATTTAAAATATTTTTAGAAGCCTTGGAGCACCAACTATTGAAGGACCGAAAGAAGAATGTAAGGAAGCGACCCTTGCAGGGGGGGAATTGTCTTCCTCCTCTGCCTAGTACAGTCTCAAATCAAAGTAGAGCATCAGGAAATGAGGCCCGTGCAGTTAAACTTGTTCTTGTTGACAGTCAAAATATTCTAAAATTGGGACCTTCAAAATCATCAATGAAGCGCAATATAAACATGAGTGTTAGCCGTAGTAACACCAAAGGAGATTCAAATACCATCAAATCAACAAGGCAACGAAAGAAATCTGGTATGATTTCAACAGCTGCATATAGAAAATGGGAGAAGGCTGCAATTGCTGGTGTTTCTTTAGTTGCAGATGCTGCGGAGCATTTGGAGCGAGCTGCAACTGTTAGAGAGATTGAACAAGATCAGGAGAATCCAGGAGAGAAGTGTTCTGATCCAACTGATTATGTCCTGCCCTCTTTACCCACATGTCCACAAAATCAATTTGTTGATAACAATGTGAATAATATGAAACTTAAGCTCCAGTTATTCCCAATCGATGAACCTACTCGAAGAGCATTGGAAGTGGATAAGCATAATCCACACCTGGAGCTTACGCTTAGTACTCGAAAGAAGATATCATCAATTTTGGAACATCTAAACCGTAAATGGGGTCATTCAAGCATAGCTGTTGGAGAATTAATGCTTTTTCCTTATGGTATTCAAAGGGAAAACTTGGTTAATTATCAGAGATGGACCCAGGAATCTACTCTGAGTGCAGCTGATATATATGCAATGATTGGAAGTCCACCCATATTTCGTTTAAGGTATGGTTGGTTCTCCAATACTGAACTTGGGTTATTAAATATGCAAGTGACTGTAGCATCCGGCTCCATGCTCACACAATCCAAAAGTAGTGTATACTCTAAGGATCGGATTGTGAATTCGGTTTCATTTCCTACATCATCAACTAATACTCATTCCTTGGAGCTCTCTGAAGATTGCAGAATATCCATGAACAGAAATCATACTCTTATGACCTCTTCACCTAATGTGCCTAACACTAGAGGCAACAATGCTCACCTAAATACAAGCTCTGAGGAATCTTGTCGTCCTACAGCCAACTCATTGTGGCATGAAAAAGATGTTAGGGATGGAGCTGTAACTACGCAGTTAGAAGACTTGGATGAGTTAAAATTAAGCAGTGGAACAGGACTGTCCGCTGGAGAATGGGCTGACAGCCTTACCAACATTAGTGTGGGGGATCTACTTTCAGGAGTGTCCCAGGATCTCGAAGATGACTGCATCAATCCTCCTATTGCTGAGAATTGTCATGATGTTCAGCAAATTCCTTTTAGTAGTGATTCTTTTGATGCTGCTATTGCTGCTCACATATCCAGACACCAAGACAAGATGGGACAATCATCGCTGGCAGCCCATATGTCTTCCATCTGGGATGCTGAAGAAACTTGTGATGCCTTTTTATTTCGAAAAGATCCTATTCTTCATGTAGATCGTCCTAGTTTGTCTCCGGTTGCTTCTTTAGAGTCTGAGAAAAAGGTTCCTGAAAGAAGCTTTGAGAAATTGGACGAGTTGTCACCCGAAAGAGAGAGGCTTGTGGAAGATTTTGTTCAATCAGACCCTATGCCTATGGACAGTTCCGAGTCTGATGCAGATATCCAGGATCATTTAGGAAAGGATTTTACTGCGCTAACAGATATATATTGGCCTGATTCCTTGGGACCTTTGGATTTGGATATCCCATCATCAACTAAGTACCATACCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGATTGAATCGCTTGATAGCAAGCAGCCTGGATGCATTTCAGAATTGCTCCTTTTTTGGGTTTGACAAGAAGGAAGCACCATCAACAGTTGAGGCTCGAGAATCTGCCACTCTTTCAGATTTTAAAATTGAAAGTGGCATCTGA 2394 0.419 MEAEAQISHHSSTQFQPEPVVSVQNGDPGVSSYVANAVIPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRPLQGGNCLPPLPSTVSNQSRASGNEARAVKLVLVDSQNILKLGPSKSSMKRNINMSVSRSNTKGDSNTIKSTRQRKKSGMISTAAYRKWEKAAIAGVSLVADAAEHLERAATVREIEQDQENPGEKCSDPTDYVLPSLPTCPQNQFVDNNVNNMKLKLQLFPIDEPTRRALEVDKHNPHLELTLSTRKKISSILEHLNRKWGHSSIAVGELMLFPYGIQRENLVNYQRWTQESTLSAADIYAMIGSPPIFRLRYGWFSNTELGLLNMQVTVASGSMLTQSKSSVYSKDRIVNSVSFPTSSTNTHSLELSEDCRISMNRNHTLMTSSPNVPNTRGNNAHLNTSSEESCRPTANSLWHEKDVRDGAVTTQLEDLDELKLSSGTGLSAGEWADSLTNISVGDLLSGVSQDLEDDCINPPIAENCHDVQQIPFSSDSFDAAIAAHISRHQDKMGQSSLAAHMSSIWDAEETCDAFLFRKDPILHVDRPSLSPVASLESEKKVPERSFEKLDELSPERERLVEDFVQSDPMPMDSSESDADIQDHLGKDFTALTDIYWPDSLGPLDLDIPSSTKYHTEDLIFSDSLSGLNRLIASSLDAFQNCSFFGFDKKEAPSTVEARESATLSDFKIESGI 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00402 797 FunFam TSL-kinase interacting protein 1 55 116 - -
Phco8g00402 797 SMART sant 51 99 IPR001005 -
Phco8g00402 797 Gene3D - 55 120 - -
Phco8g00402 797 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Phco8g00402 797 MobiDBLite consensus disorder prediction 163 188 - -
Phco8g00402 797 ProSiteProfiles SANT domain profile. 55 101 IPR017884 -
Phco8g00402 797 PANTHER CRAMPED PROTEIN 42 770 - -
Phco8g00402 797 CDD SANT 54 97 IPR001005 -
Phco8g00402 797 FunFam TSL-kinase interacting protein 1 16 104 - -
Phco8g00402 797 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Phco8g00402 797 MobiDBLite consensus disorder prediction 225 244 - -
Phco8g00402 797 Pfam Myb-like DNA-binding domain 54 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00402 Phco-Chr8 3677430 3683171 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco8g00402 Myb_DNA-binding 5.8e-07 CL0123