Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00395 ATGGCGGAAGAGCGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGCTACCGCACTCTCCTCGAAGGCGATCGCGTCGAGTTCGCTATCGCCACCGGCGACAACGACAAGACAAAGGCCGTTGACGTCACCGGTATCGATGGCGCTCCTCTCCAGCCCCGTGCCGCTGCCGGCAATCGCGGCTCTGGCTACGGCTTCGGCCCCAGGCGGAATGGCGCGGGCGCTGGCGGTGCCGCGTGCTACCAGTGTGGCGATTTCGGTCACCTCGCCAGGGACTGCAACCGGAGCAGCAATTCCGGCGGCGGAGGTGGTGGTGGGTGTTTTGTTTGCGGCGGGTTCGGTCACCTCGCAAGGGATTGCGTGCGCGGAGGCAACATCGGCGGTGGAGGCGCCGGAGGAGGCGGCGGAAGCGGCTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCCACGGCGAAAAGCGTCGGTGGTGGTGGTGGTGGTAGCGGTGGTGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCTAGGGATTGCGGCATTGAAGGAGGAAGGTTTGGCGGTGGTAACAGTGGTGGCGGCGGCGGCGGTGCTGGGAAGAGCACCTGCTTTAATTGCGGGAAGCCTGGACATTTTGCGAGGGAGTGTGTCGAGGCTTCCGGGTGA 756 0.6349 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAAAGNRGSGYGFGPRRNGAGAGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNIGGGGAGGGGGSGSCFRCGGFGHMARDCATAKSVGGGGGGSGGGCFRCGEVGHLARDCGIEGGRFGGGNSGGGGGGAGKSTCFNCGKPGHFARECVEASG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00395 251 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Phco8g00395 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 185 248 - -
Phco8g00395 251 PRINTS Eggshell protein signature 185 195 - -
Phco8g00395 251 PRINTS Eggshell protein signature 159 174 - -
Phco8g00395 251 PRINTS Eggshell protein signature 224 242 - -
Phco8g00395 251 PRINTS Eggshell protein signature 98 109 - -
Phco8g00395 251 Gene3D - 1 82 IPR012340 -
Phco8g00395 251 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Gene3D - 191 215 - -
Phco8g00395 251 Gene3D - 226 251 - -
Phco8g00395 251 Gene3D - 161 188 - -
Phco8g00395 251 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Gene3D - 100 153 - -
Phco8g00395 251 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Phco8g00395 251 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Phco8g00395 251 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Pfam Zinc knuckle 195 209 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Pfam Zinc knuckle 232 246 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Phco8g00395 251 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Phco8g00395 251 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Phco8g00395 251 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Phco8g00395 251 ProSiteProfiles Zinc finger CCHC-type profile. 196 209 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Phco8g00395 251 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Phco8g00395 251 SUPERFAMILY Retrovirus zinc finger-like domains 156 210 IPR036875 GO:0003676|GO:0008270
Phco8g00395 251 SMART csp_8 7 72 IPR011129 GO:0003676
Phco8g00395 251 ProSiteProfiles Zinc finger CCHC-type profile. 166 179 IPR001878 GO:0003676|GO:0008270
Phco8g00395 251 SUPERFAMILY Retrovirus zinc finger-like domains 217 247 IPR036875 GO:0003676|GO:0008270
Phco8g00395 251 ProSiteProfiles Zinc finger CCHC-type profile. 233 246 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00395 Phco-Chr8 3598731 3599486 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Phco8g00395 CSD 1.2e-24 CL0021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00395 8 3598731 3599486 Phco8g00395 8 3598731 3599486 ECH