Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00357 ATGAGTCAGTTTGAAGGAAATGAATGGGAGAGTGCATTGAATGATGAACTCTGTAACGTTAACTTTGAGGATATTTTTGGGGCCACCATGGATCAAATGCTTGGCGATGTCATCTACCAAGAAGAAGCCTGCAACTTACAGTGCCAACCATTGCCTCAACAAAGCTTTTCTGATCATGCTCTCACACAACTCAATGAAAACGTCACTCATGATGAATCGGGTCTGACCCAGTTACCCAATAACCAGCAAAACTCCGAGGACCAGAACGGTGGTTGCGGAGCACCGCGTCGACAGCGCGAGCCAAGGAAGACATGGAGCATTGAAGAACACAAATTATTTCTTCTTGGCCTTCAAATGTACGGGGGAAGTTGGAAAAAGATTTCGGAACAAATTGTTCGAACCAAAACACCATCTCAACTAGCCAGTCACGCTCAAAAATACTTCATACGTCAGAGAATGCTGCCATCACAGAGGAAAAGAAAAAGCATTCATGATATAACTCTATAA 507 0.4359 MSQFEGNEWESALNDELCNVNFEDIFGATMDQMLGDVIYQEEACNLQCQPLPQQSFSDHALTQLNENVTHDESGLTQLPNNQQNSEDQNGGCGAPRRQREPRKTWSIEEHKLFLLGLQMYGGSWKKISEQIVRTKTPSQLASHAQKYFIRQRMLPSQRKRKSIHDITL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00357 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 152 IPR017930 -
Phco8g00357 168 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 52 167 IPR043363 -
Phco8g00357 168 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 151 IPR006447 GO:0003677
Phco8g00357 168 SUPERFAMILY Homeodomain-like 98 152 IPR009057 -
Phco8g00357 168 Gene3D - 103 154 - -
Phco8g00357 168 MobiDBLite consensus disorder prediction 70 103 - -
Phco8g00357 168 CDD SANT 104 148 IPR001005 -
Phco8g00357 168 MobiDBLite consensus disorder prediction 70 91 - -
Phco8g00357 168 SMART sant 101 150 IPR001005 -
Phco8g00357 168 ProSiteProfiles SANT domain profile. 100 152 IPR017884 -
Phco8g00357 168 ProSiteProfiles Myb-like domain profile. 97 148 IPR001005 -
Phco8g00357 168 Pfam Myb-like DNA-binding domain 102 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00357 Phco-Chr8 3274339 3274939 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco8g00357 Myb_DNA-binding 2.2e-11 CL0123