Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00332 ATGGGTCTCTGCTTCTCCTCCTCTTCCTCCCCTTCCCCCAACCCTCCTAACTACTCAGGTTCAACGAGTAACGTGGGGTTCTCCGCCACCACCAGCAGCTTCGGTAAGAGCCAATTCTCGGAGATGGCCAGTGGGAGCATCGATAGCGAAGGGTCCCTTCCATGTTGTTCCCCTGACGGCCAGATTCTGGAACGGCCCAACTTGAAGGAGTTCAGTTTCGGGGACCTGAGATCCGCGGCCAAGAGTTTCAAGGGGGACACATTGCTGGGTGAAGGTGGGTTTGGCAGAGTCTACAAGGGTTGGTTGGATGAGAAGACCCTCACCCCTGCCAAACCAGGCACTGGCATGGTCGTCGCCATCAAAAAATTGAACCCCGAAAGCACGCAAGGCTTTCAAGAATGGAAGTCAGAAGTGAACTTTTTAGGAAGGCTTTCCCACCCCAACCTGGTTAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTGTACGAGTTCATGCCTAAGGGAAGCTTGGAGAATCATCTATTTAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACTCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGGCTAGCATTCCTGCACGCCTCCGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTCCTCGATGGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCTAAATTGGGACCATCTGGGGGACAATCACATGTAACTACGAGGGTCATGGGCACCTACGGTTATGCTGCTCCAGAATATATCGCAACAGGTCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTTCTTCTTGAAATACTGACAGGCATGAGGGCACTTGACACAAGAAGGCCAACAGGGCAGCAGAATCTGGTTGAGTGGACCAAACCTTTTCTCTCTTCCAAAAAAAAGTTGAAAACTATTATGGATGGTAGGATAGAGGGTCAATATTCACCCAAGGCTGCATTACAAGCAGCAGAACTTACTCTAAAATGCCTAGAGCATGACCCTAAACAACGTTCTTCAATGAAAGAAGTACTTGAGGGATTGGAAGCCATTGAAGCCATCCATGTAAAATCCAAGGAATCCAAAACCCGCAATTCTCACCACATTTCTCATCAACATCCCCGGAAGAGAGATGTGAAGGATTGCCTTTTCGCAAACCTAAAACTTGTCAAATTACGGACGTTCAAGAAACCAAACCAAGCACGTTTAGTTGAAGAAACCATAGGGTTTCAAGAAGGCTCTGTTATCAGGCATTGGCAGAGTGCAATGCAGAAAAATACTGGAAACATTATAGGCCAATTCTTTGGTGGTTTAAATTGTTATCTAAGAAGATGTATGTTTGCCATTTTATCTGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAAAAACATGGAAGAAGGTGATGGCCACAAGGCTGGATTTAATGTTCTCACGTCCATCCTTAGATACTGCTATGAATTAGGAGTGAAGTATGTAACTGTCTATGCATTCAGCATTGATAACTTTAAAAGGAAGTCTGAAGAAGTTCAGTCCTTGATGGAATTGATGCGGAAAAAGATTGAGGAGTTGCTTCAACAAGAAAGTCTCATTAATGAATATGGTGTTAGATTACATTTCATTGGGGAGATGCAACTATTGACAGAGCCTGTCAGGGCTGCTGTGGAAAGGGCAATGAGAGTTACTGCCCACAACAACCAGAGAGTTCTTTTGATTTGTGTAGCATATACTTCTCGTCAAGAGATTGTGCACGCTGTTCAAGAATGTTGCAAGGAAAAATTGAATGAAGTTCAAGCGTTAAAAGAAGCGAAAGCTACAAATGGTGCGTTTTCAAGAATTGATCAGGGCCTGAAAGGAAATGATTTTGATTTGCTTTCTCAAGATTCATGTAAAGACTATCTAAAGGCAATCAAAGCTTGTAGTAGTGAAGTAGAAAGTGCTGCAAGGAAAGATGGATTGTTTGAGAATAATGTCGAGAATCATATCGGTTACTACCCTGAAGCTGAAATGACATCATACAATGGGCTGGTTGAAATGACTGAAGATAGAAAGAATAAACAGGATGAGGTTCCTTTCATAAAACTGGCGGATATTGAGAAGAACATGTACATGGCAGTTGCACCTGATCCGGACATCTTGATCCGAACTTCTGGAGAAGCTCGCCTCAGTAATTTTCTACTTTGGCAGACTAGTACATGCCCTTTATATGCGCCAACTGCACTTTGGCCTGAAATTGGTCTAAGACACTTGATCTGGGCAGTATTGAACTTTCAGAGACACTATTTTTATTTGGAAAAGAAAAAGAAACAGTTTTAA 2397 0.433 MGLCFSSSSSPSPNPPNYSGSTSNVGFSATTSSFGKSQFSEMASGSIDSEGSLPCCSPDGQILERPNLKEFSFGDLRSAAKSFKGDTLLGEGGFGRVYKGWLDEKTLTPAKPGTGMVVAIKKLNPESTQGFQEWKSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKPFLSSKKKLKTIMDGRIEGQYSPKAALQAAELTLKCLEHDPKQRSSMKEVLEGLEAIEAIHVKSKESKTRNSHHISHQHPRKRDVKDCLFANLKLVKLRTFKKPNQARLVEETIGFQEGSVIRHWQSAMQKNTGNIIGQFFGGLNCYLRRCMFAILSVGPVPSHIAFIMDGNRRYAKKKNMEEGDGHKAGFNVLTSILRYCYELGVKYVTVYAFSIDNFKRKSEEVQSLMELMRKKIEELLQQESLINEYGVRLHFIGEMQLLTEPVRAAVERAMRVTAHNNQRVLLICVAYTSRQEIVHAVQECCKEKLNEVQALKEAKATNGAFSRIDQGLKGNDFDLLSQDSCKDYLKAIKACSSEVESAARKDGLFENNVENHIGYYPEAEMTSYNGLVEMTEDRKNKQDEVPFIKLADIEKNMYMAVAPDPDILIRTSGEARLSNFLLWQTSTCPLYAPTALWPEIGLRHLIWAVLNFQRHYFYLEKKKKQF 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00332 798 NCBIfam polyprenyl diphosphate synthase 472 627 IPR001441 GO:0016765
Phco8g00332 798 Hamap Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 472 793 IPR001441 GO:0016765
Phco8g00332 798 SUPERFAMILY Undecaprenyl diphosphate synthase 469 627 IPR036424 GO:0016765
Phco8g00332 798 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Phco8g00332 798 Coils Coil 527 554 - -
Phco8g00332 798 Pfam Putative undecaprenyl diphosphate synthase 479 787 IPR001441 GO:0016765
Phco8g00332 798 SUPERFAMILY Protein kinase-like (PK-like) 64 366 IPR011009 -
Phco8g00332 798 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g00332 798 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Phco8g00332 798 PANTHER OS01G0588500 PROTEIN-RELATED 33 369 - -
Phco8g00332 798 ProSitePatterns Undecaprenyl pyrophosphate synthase family signature. 738 755 IPR018520 GO:0016765
Phco8g00332 798 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Phco8g00332 798 CDD Cis_IPPS 475 786 IPR001441 GO:0016765
Phco8g00332 798 Gene3D Transferase(Phosphotransferase) domain 1 169 393 - -
Phco8g00332 798 Pfam Protein tyrosine and serine/threonine kinase 87 364 IPR001245 GO:0004672|GO:0006468
Phco8g00332 798 SUPERFAMILY Undecaprenyl diphosphate synthase 704 786 IPR036424 GO:0016765
Phco8g00332 798 FunFam Serine/threonine-protein kinase BIK1 52 168 - -
Phco8g00332 798 Gene3D - 456 787 IPR036424 GO:0016765
Phco8g00332 798 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00332 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Phco8g00332 798 CDD STKc_IRAK 89 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00332 Phco-Chr8 3077275 3086467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g00332 Prenyltransf 1.2e-77 No_clan