Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00329 ATGAAGCTGAAAATATCTCATCCCAAACTTCACGTGGCGCGTTACTCTCATTCTCGTGGCATCTTGAGGAAACACATTGATTTGAAGGCGTTGGTAACAGCGTATGATTTCGCAGCACACGGATCGCTGACCACAACGCGCACTCTCACTTTTCCCTTTCTCTCTTTGAAACCCTTGTGCTCTTCGCTGACTCTATCCAGAGTCTTCTTGTCTTCATCGACTTTTGCCATGCCGAAGGTTAAAGCTGACACTGTAGCTTCCGATAACAGGTTGAAGCGCAAGGGCGCTGGTGCTGGAAGGAAACAATCGAAGAAAGCAGCTAAGGATCCCAACAAACCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCAACCAACAAATCTGTGGCTGTTGTTGGTAAAGCTGGTGGTGATAAATGGAAATCTTTGTCCGATGCCGAGAAAGCTCCCTTCATTGCTAGGGCTGAGAAGAAGAAAGAAGAGTATGAGAAGAGTATCTCAGCCTATAATAAGAAATTGGAAGGAAAACATTCAGAGGAAGAAGAGTCTGACAAGTCAAAATCTGAAGTTAACGACGAGGAGGAAGACGAGGAGGACGAGGAGGATGATGAGTGA 651 0.4562 MKLKISHPKLHVARYSHSRGILRKHIDLKALVTAYDFAAHGSLTTTRTLTFPFLSLKPLCSSLTLSRVFLSSSTFAMPKVKADTVASDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPTNKSVAVVGKAGGDKWKSLSDAEKAPFIARAEKKKEEYEKSISAYNKKLEGKHSEEEESDKSKSEVNDEEEDEEDEEDDE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00329 216 Coils Coil 164 215 - -
Phco8g00329 216 CDD HMG-box_AtHMGB1-like 114 167 - -
Phco8g00329 216 SMART hmgende2 112 183 IPR009071 -
Phco8g00329 216 SUPERFAMILY HMG-box 104 185 IPR036910 -
Phco8g00329 216 Gene3D High mobility group box domain 97 200 IPR036910 -
Phco8g00329 216 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 113 182 IPR009071 -
Phco8g00329 216 MobiDBLite consensus disorder prediction 152 216 - -
Phco8g00329 216 Pfam HMG (high mobility group) box 113 182 IPR009071 -
Phco8g00329 216 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 84 215 IPR031061 -
Phco8g00329 216 MobiDBLite consensus disorder prediction 198 216 - -
Phco8g00329 216 MobiDBLite consensus disorder prediction 152 197 - -
Phco8g00329 216 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00329 Phco-Chr8 3051422 3052926 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco8g00329 HMG_box 2.1e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00329 8 3051422 3052926 Phco8g00329 8 3051422 3052926 ECH