Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00318 ATGAAGTTTCTTCCTCGTCGCTTTTCCTTCCTTATTGCGTTGCTAATCGCGTTCAGCCTCGTCCAAAACTCAGCAACAACGCTTCCCAAACATCACAAGAATGAAGAACGCGACGTGCATAGTGGACTTCATCGACCCTCTTCACGATCCCTTCTCTCTCTTTCACCTAAGGTTGCAACGACGGCACTGGTTGTGACCCTAGATGGGACTATGTATTTGTTGGACAGATCTCCTGGTTCCGTGAAGGTGATATGGTCATTCTCGACAGGATCGCCCATCTACCAATCGTATAAAGCTCCCATAAAAAGGGATACTGATAAAGAAAATGCATCTGCTGCACTAATGAGTGGATTCGTGGAATGTGGGGATGACTGGTCATTGTACATGCACGACAGACACTTTGGTAAAATGAGAATCTCAGAATCTATTACAGAATATGTAGCTCGTACTCCTACCCTTTCAGATGATGGAGCAGTGACACTTGGATCCAAAAAAAGCACTTTGTTTGAAGTTGATGCTAAAACTGGATCAATCATTCAAATCCATGCGATGTCTGATCCGGTTAATGCTTCTGCACCTTGGAGTGATGGGAGGCAAAGTGTTACAAATATCCCCAACATAAAGAACAGGGATCTTGCTGATCCTGTGAAACTAAATTCCCCACAGCCACTGCTCAAGATTTTTAGAACAGATTATTATCTTCAATCTGTTGGTCCTAGCTCAGGAATAGTTTTGTGGACTATGGCACTAGCTGAATTTCAGGCTGTATTATTATGCCAACATTCCTCTTCTGATATAGAGGATGAGTATGTTTCTGATAGTGGCCTCAATTTTACAATGCCATACCCATGTCAAGAGATACGACAAGTCTTCCGCCTGAAAAAGAATTTTCTATTTGAACCTTCACTAACTGAAAAATTACTTTGGGATTATCATGAAAATGATATGCTCTCAATGCCCTACTCAAATCTTATGCTTCCTTTGCAGCCGAATGTTGATAGATTATTCAATGGTGATGATGATAAGATGATGCTCCCTCAACCTCTCATCGAGATTACTACACCAAGGGAAGTTTATTTGAATAGGACAAATGAATGGCCTACTCCATTACCTCTTGTATGGTTTACAGTGTTTCTTTTGGTAATTTCACTCATCTATCCTCTAGTGATTAAAGATCAAGAAACACTGAAGGACCAAAATAGTGAGTCTGAATTAAAAAGTTCACCTGCTAAGAAAAAGAAGACACATAAATCAGGAAAGAAAAATGGCATTATTAATAAAAGGGAAAATCACCTGTCTTTAGAGAATGAGAATGCTCTGACACAAAGAGATAATGATAAAGAAGTATGGAAGCACTTTAGTCATGTTAATGAAAATATTGAAGGACGAAGAATTGGTAAATTATTTGTTTCAAACAAAGAGATTGCTAAGGGAAGCAATGGCACCATTGTGCTCGAGGGAATATATGAAGGCCGAGCAGTTGCTATCAAACGCCTTGTCAAGGCTCACCATGACATAGCTTATAAGGAAATAAAAAACCTCATCATGTCTGATTGTCATCCAAATATTGTCCGATGGCATGGTGTGGAGTATGATAACGATTTTGTTTACCTTGCTTTGGAACGATGTACATGCAATTTAGATGATTTGGTTCAAATTTATTCAGATATATCGGTTACCTCTACGTTTAGGAAGGACCAAGGTATTGGGTGTTTGATTAAGTCCCAAATGGAGACGGGGAAGGATAGTACACAGTGTCTTTGGAAGGAAAATGGCTATCCATCTCCTCTACTACTAAAATTGATGAGGGACATTGTTTCTGGGGTCATTCATTTGCATGAATTAGGAATAATACATCGAGATATGAAACCACAAAATGTTCTAATAACCAAGGAAAGATCCTTATGTGCAAAACTTTCTGATATGGGAATTAGCAAATGCCTTCTTGAAAATATGTCTTCGCTGGGTAATAATGCAACTAGTGGTGGCAGTTCAGGTTGGCAATCACCAGAACAACTTGTTCAAGGACGTCAAACCCGGGCAGTAGATATGTTTAGTTTAGGTTGCGTCTTCTTTTTCTGCATTACTGGGGGAAGACATCCATTTGGAGAACGTATTGAACAGGATATCAATATTTTGAAAAATCACATGGACCTTTTCTTAGTGGAGTTCATTCCTGAAGCCAAAGATCTTATTAGTCGTTTATTAAACCCTTACCCTGATCTAAGGCCAAAGGCGACTGAAGTATTGTACCATCCTTTTTTCTGGAGTTCCGAGATGCGACTATCCTTCTTGCGTGACACCAGTGACAGGGTGGAAATGGAAAATAGAGGGACTAATTCTGATCTTTTGGTGACATTAGAAAGCATTGCCACAGATGCTTTGGGTGGAAAATGGGATGAAAGGATGGAACCAGCTTTCATTGCTAACATCGGTCATTACCGGCGGTATAATTTTAACAGTGTTCGAGACTTGTTGCGAGTTATGAGAAACAAACTAAATCATTATAGAGAATTGCCTCGTGAAATCCAGGAACTTGTAGGACCTGTTCCCGAAGGATTCTACGAATACTTTGCTAATCGATACCCAAGACTCTTGATTGAAGTGTATAAAGTTATTCTCCATTATTGCAAGGAGGAAGAATGTTTCCAGAGATATTTTAAAAGTGTTGATTAG 2676 0.395 MKFLPRRFSFLIALLIAFSLVQNSATTLPKHHKNEERDVHSGLHRPSSRSLLSLSPKVATTALVVTLDGTMYLLDRSPGSVKVIWSFSTGSPIYQSYKAPIKRDTDKENASAALMSGFVECGDDWSLYMHDRHFGKMRISESITEYVARTPTLSDDGAVTLGSKKSTLFEVDAKTGSIIQIHAMSDPVNASAPWSDGRQSVTNIPNIKNRDLADPVKLNSPQPLLKIFRTDYYLQSVGPSSGIVLWTMALAEFQAVLLCQHSSSDIEDEYVSDSGLNFTMPYPCQEIRQVFRLKKNFLFEPSLTEKLLWDYHENDMLSMPYSNLMLPLQPNVDRLFNGDDDKMMLPQPLIEITTPREVYLNRTNEWPTPLPLVWFTVFLLVISLIYPLVIKDQETLKDQNSESELKSSPAKKKKTHKSGKKNGIINKRENHLSLENENALTQRDNDKEVWKHFSHVNENIEGRRIGKLFVSNKEIAKGSNGTIVLEGIYEGRAVAIKRLVKAHHDIAYKEIKNLIMSDCHPNIVRWHGVEYDNDFVYLALERCTCNLDDLVQIYSDISVTSTFRKDQGIGCLIKSQMETGKDSTQCLWKENGYPSPLLLKLMRDIVSGVIHLHELGIIHRDMKPQNVLITKERSLCAKLSDMGISKCLLENMSSLGNNATSGGSSGWQSPEQLVQGRQTRAVDMFSLGCVFFFCITGGRHPFGERIEQDINILKNHMDLFLVEFIPEAKDLISRLLNPYPDLRPKATEVLYHPFFWSSEMRLSFLRDTSDRVEMENRGTNSDLLVTLESIATDALGGKWDERMEPAFIANIGHYRRYNFNSVRDLLRVMRNKLNHYRELPREIQELVGPVPEGFYEYFANRYPRLLIEVYKVILHYCKEEECFQRYFKSVD 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00318 891 SMART serkin_6 469 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00318 891 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 759 891 - -
Phco8g00318 891 Gene3D - 47 282 IPR015943 GO:0005515
Phco8g00318 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Phco8g00318 891 Gene3D KEN domain 758 891 IPR038357 -
Phco8g00318 891 ProSiteProfiles KEN domain profile. 758 889 IPR010513 GO:0004540|GO:0006397
Phco8g00318 891 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 61 196 IPR011047 -
Phco8g00318 891 Pfam Ribonuclease 2-5A 761 887 IPR010513 GO:0004540|GO:0006397
Phco8g00318 891 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 580 757 - -
Phco8g00318 891 Gene3D Transferase(Phosphotransferase) domain 1 580 757 - -
Phco8g00318 891 MobiDBLite consensus disorder prediction 397 428 - -
Phco8g00318 891 Pfam Protein kinase domain 471 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00318 891 Gene3D Phosphorylase Kinase; domain 1 433 541 - -
Phco8g00318 891 SUPERFAMILY Protein kinase-like (PK-like) 469 760 IPR011009 -
Phco8g00318 891 PANTHER IRE1-RELATED 138 889 IPR045133 GO:0004521|GO:0004674|GO:0030968
Phco8g00318 891 ProSiteProfiles Protein kinase domain profile. 469 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00318 891 CDD RNase_Ire1 759 887 - -
Phco8g00318 891 SMART PGNneu 820 874 - -
Phco8g00318 891 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 461 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00318 Phco-Chr8 2961119 2968361 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Phco8g00318 Pkinase 6.1e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00752 4 5804803 5811051 Phco8g00318 8 2961119 2968361 PCT