Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00305 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTACCCGTGGCTGTGGAGGAAGTTTTGGCTGAAGCACAGGTTCAACCAGAAGTTTTGGCTGCTCCTTTGTCCGTAGGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGATGCAGAGGCACCTGTGGAGGATAAAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAACTCGGTCCCTGTAATAGACAGTGCTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAGCAGAGCAGAAGAACTTCCTCAGTGTGATAAGGACATAGAGAATGATTCTAATGTTTGTCAAAACAATGCTGATGCTGCTGAAATGACTGTGGAGGTGAAGCCCAAGGCTTTTGAAGCTGAAAGTAAAACTTGCAATAATGGGGAATCCAACTCCGCACACCCTATTCATAACGAACCTAAAACAGCACATGCTGTTCAGACCGATATAAGAGGTGAAGTCAAGAGTGGATTAGACAATGAGAATAAGTATAATGAAAAGGATGCTGCTGTTGCACATGCAGATAATGGAAATTTGATCTCACAGAACTTGTATTTTTTGGATCCTGACTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTAAACAGATTGGGCGGCTATGATAAGGTCACGACATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCCGAGCCAGTGAATGTTGAAAATCAGTGTGTCCAAGGATCAGCATCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAAGGGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTGGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCTGAGCATTCTGACAATCCATGGGGGGTCACACCTTTCAAAAAGGTTGTGAGTTTGCCTTCAAGGATTGATACTCATCAGACTTCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1578 0.4271 MSDTKENEEAGQNVPVAVEEVLAEAQVQPEVLAAPLSVGDTSNHAENGKVDAEAPVEDKIVKPEANSECIPQQDVLNSQNTINSVPVIDSAPVLNKTEGENALDVKSRAEELPQCDKDIENDSNVCQNNADAAEMTVEVKPKAFEAESKTCNNGESNSAHPIHNEPKTAHAVQTDIRGEVKSGLDNENKYNEKDAAVAHADNGNLISQNLYFLDPDYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPVNVENQCVQGSASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKGSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00305 525 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 425 525 IPR002068 -
Phco8g00305 525 SMART ARID_2 224 314 - -
Phco8g00305 525 Pfam ARID/BRIGHT DNA binding domain 230 314 IPR001606 GO:0003677
Phco8g00305 525 Gene3D - 227 325 IPR036431 GO:0003677
Phco8g00305 525 FunFam AT-rich interactive domain-containing protein 3 417 525 - -
Phco8g00305 525 SUPERFAMILY HSP20-like chaperones 434 521 IPR008978 -
Phco8g00305 525 CDD ARID 229 314 - -
Phco8g00305 525 FunFam AT-rich interactive domain-containing protein 3 227 326 - -
Phco8g00305 525 SMART bright_3 228 319 IPR001606 GO:0003677
Phco8g00305 525 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 92 524 IPR045147 GO:0006357
Phco8g00305 525 Gene3D - 388 525 IPR008978 -
Phco8g00305 525 SUPERFAMILY ARID-like 222 328 IPR036431 GO:0003677
Phco8g00305 525 CDD ACD_sHsps_p23-like 444 520 - -
Phco8g00305 525 ProSiteProfiles ARID domain profile. 227 318 IPR001606 GO:0003677
Phco8g00305 525 Pfam Hsp20/alpha crystallin family 442 524 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00305 Phco-Chr8 2792060 2800640 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco8g00305 HSP20 4.9e-06 CL0190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00736 4 5628452 5634048 Phco8g00305 8 2792060 2800640 PCT