Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00288 ATGACAACCCTTCGTGTGTTGCTCTTTCTGGGACTCTTGTGGGCTGAAATTCATGTCATTTCTTCATACACTGAAACTCAAGATGTTGTTGCACTTAGATCATTAAAAGATGAATGGCAAAATACACCGCACAGTTGGGACAGATCAGATGACCCCTGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGATTGTCAACCATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGCCAACTTTCAGAATTGAGATCCTTGGATTTGTCCTTTAATAGAGATTTAACAGGTTCTCTCTCTCCAGAGTTAGGAGAACTAAGCAAGCTAAATATCCTGATTTTGGCCGGTTGCGGCTTCAGTGGTAATATTCCAGATGAATTAGGAAATCTTTCAGAGCTATCCTTCCTGGCTTTAAACTCAAATAACTTCACTGGAAAAATACCTCCTTCATTGGGTAAACTCTCCAAAATTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGGCCTATCCCAGTTTCAACCTCCACATCCCCTGGATTAGACCTTCTTTTAAAGGCTAAACACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATACCCCCCAAGCTTTTCAGCTCAGAGATGATACTCATACACATATTGTTTGATGGGAATAAATTAAGTGGGATTATACCTTCTACATTGTTACAAGTCAAGACTGTTGAGGTTCTACGGCTTGATAGGAATTTCCTGACAGGAGAGGTTCCATCAAATCTCAACAACCTTACAACCATCAATGAATTGAATTTAGCTCATAATAATTTCACAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTAGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTACCATCACTAACCACTCTTGTTATGGAGTTTGGATCCCTTCAAGGTCGTATTCCATCGAAACTATTTGAAATTCCTCAAATACAGCAAGTGAAACTACGAAACAATGTATTGAACGATACATTGAACATGGGTGAAAACATTTGTCCCCAATTGCAGCTTGTAGATTTACAACAAAATGAGATTTCCTCAGTGACCCTCAGTTCACAATACAAAAATACATTGATTCTAATAGGAAATCCAGTGTGCAGTAGTGCTCTCTCAAATACAAATTACTGCCTTCAGCTGCAGGCTCAGCAACCCTATTCCACCAGCTTGGCTAGTTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTAAATGTGCCTATCCATACGAAGGAATGATGCACTTTAGAGCACCCTCATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCGATAGTAATGACTATCTTGTAGTGCAACTAGCACTCTTTCCATCAACAGGCCAATACTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTAAGTATTCAAACTTACAAGCCACCAAAAGAGTTTGGACCCTATTACTTCCTTGCATCTCCTTATCCTTTTTCAGGTTCTCACAGAGGAGCTTCTCTTAGCAAAGGTGTTGTTATTGGGATAGCAATTGGCAGCACATTTCTGGTTCTGAGCCTCATAGGATTAGCTATTTACGCGATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATTGGATTAAGTAGACCATTTGCATCATGGGCACCAAGTGGGAAGGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAAAAATGCACCAGCAATTTCTCTGAAAACAATGAGATAGGCTCTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAACGGTTGCAATCAAACGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGCCCTTGTGGGGTTCTGCTTCGAACAAGGGGAACAGATGTTGGTTTACGAATTTATAGCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAAATCTGACATCCATCTTGACTGGAAGAGGAGACTGCGCATTGCTCTTGGTTCAGCCAGAGGACTTGCATACTTACACGAACTGGCCAACCCTCCCATAATCCACAGAGATGTGAAGTCGACTAATATCTTGCTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCCAAACTTGTATCAGACAGTGAGAAAGGCCATGTTTCCACTCAGGTTAAAGGGACATTGGGTTATCTGGATCCCGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTAGTGATGCTTGAACTAATAACTTCAAGACAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCACCCTGATGAATAAGAATGATGAAGAACACTATGGTTTGAGGGAACTGATGGATCCAGTGGTGAGGAACACACCGACCCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACATCTGCATCCTCATCTGCCACTGACTTTGGTGTTTCCAAGGGTGGAATGAGGCATCCCTACATTGATGCTTCTTTTAGCAAGAAAGACAATGGTAATGATAGTAGTAATAGTGGCTTTGACTACAGCGGAGGGTACACACTTTCAACAAAAGTCGAACCCAAATAG 2901 0.4216 MTTLRVLLFLGLLWAEIHVISSYTETQDVVALRSLKDEWQNTPHSWDRSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLSELRSLDLSFNRDLTGSLSPELGELSKLNILILAGCGFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKIYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNKLSGIIPSTLLQVKTVEVLRLDRNFLTGEVPSNLNNLTTINELNLAHNNFTGPLPDLTGMDTLNYVDLSNNSFDPSDAPTWFTTLPSLTTLVMEFGSLQGRIPSKLFEIPQIQQVKLRNNVLNDTLNMGENICPQLQLVDLQQNEISSVTLSSQYKNTLILIGNPVCSSALSNTNYCLQLQAQQPYSTSLASCGGKSCPPDQKLSPQSCKCAYPYEGMMHFRAPSFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFDSNDYLVVQLALFPSTGQYFNRSEVQRIGFELSIQTYKPPKEFGPYYFLASPYPFSGSHRGASLSKGVVIGIAIGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDDLKKCTSNFSENNEIGSGGYGKVYKGVLPDGKTVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVALVGFCFEQGEQMLVYEFIANGTLRESLSGKSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKNDEEHYGLRELMDPVVRNTPTLIGFGRFLELAMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVSKGGMRHPYIDASFSKKDNGNDSSNSGFDYSGGYTLSTKVEPK 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00288 966 MobiDBLite consensus disorder prediction 939 956 - -
Phco8g00288 966 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Phco8g00288 966 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Phco8g00288 966 SMART serkin_6 628 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00288 966 Gene3D Phosphorylase Kinase; domain 1 602 703 - -
Phco8g00288 966 PANTHER RECEPTOR-LIKE PROTEIN 55 33 901 - -
Phco8g00288 966 CDD STKc_IRAK 634 901 - -
Phco8g00288 966 FunFam Leucine-rich repeat protein kinase family protein 596 703 - -
Phco8g00288 966 FunFam Predicted protein 186 405 - -
Phco8g00288 966 Gene3D Transferase(Phosphotransferase) domain 1 704 923 - -
Phco8g00288 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Phco8g00288 966 SUPERFAMILY L domain-like 39 409 - -
Phco8g00288 966 FunFam Leucine-rich repeat family protein 27 183 - -
Phco8g00288 966 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 704 915 - -
Phco8g00288 966 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Phco8g00288 966 Pfam Protein tyrosine and serine/threonine kinase 631 898 IPR001245 GO:0004672|GO:0006468
Phco8g00288 966 Gene3D Ribonuclease Inhibitor 286 401 IPR032675 -
Phco8g00288 966 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Phco8g00288 966 MobiDBLite consensus disorder prediction 932 966 - -
Phco8g00288 966 ProSiteProfiles Protein kinase domain profile. 628 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00288 966 SUPERFAMILY Protein kinase-like (PK-like) 614 910 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00288 Phco-Chr8 2652320 2658261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco8g00288 PK_Tyr_Ser-Thr 3.2e-49 CL0016