Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00286 ATGGACAAAACCCCTAAAGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCTCCACCAACAACTGGCATGGCAACTATTAATCCTGACTGGTCTAACTTTCAGACATATTCTCCCATGCCTCCACACGGTTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCCCCCTATGGCACCCCAGCGCATCCCTATGTAGCAATGTATCCCCATGGTGGCATTTATGCCCATCCATCCATTCCTCCGGGGTCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATACATCGGGAAATAACCCAGGCAGCATTGAAGTCGGTGCTAAACCTCCCGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGCGCTAGTGGGGGTAGTTTGAATATGTGGATTACAGGAAAAAATAATGAACTTGGTAAAACAACCGGAGAATCTGCTAATGGGATTCATTCCAAAAGTGGCGATAGTGCAAGTGACGGAACTAGTGAAGGAAGTGATGAGAATTCCCAGAATGACTCTCAATTGAAATCCGGGGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCGGCACATGCTCCTCAAAATGGGGTACATAGTAGACCTCAGGCACTTGTTAACCAAACTATGCCTACCATACCTATATCTACTTCAAGTGCTCCTGGAGCAGTTCCTGGTCCCACTACTAATTTAAATATAGGAATGGATTACTGGGGCACGCCAACTTCATCCACCATTCCTGCACTGCATGGAAAGGTTTCTTCTACTGCAGTTGCTGGAGGAATGATTACTGCTGGGTCAAGAGATGGTGTTCAGTCCCAAATTTGGCTACAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGGCTGAATGCGATGAACTAGCTCAGCGTGCTGACGTTTTGAAAGAAGAAAATGCCACTCTCCGAGCAGAAGTAAGCAGGATCAGGAGTGAGTACGAGCAGCTACGTTCTGAGAATGCTTCCCTCAAGGAGAGACTTGGGGAGATACCGGGTGTTGCTACGCCTGGGAACGAGGATGTTAGGTCTGGCCAGAATGATCAGCATGTTAGTAATGACACTCAACAAAGTCGTCAGAAAGAGGCTGTGCAGGGTGTTCATTAG 1242 0.4718 MDKTPKEKESKTPPATSQEQSPPTTGMATINPDWSNFQTYSPMPPHGFLASSPQAHPYMWGVQHIMPPYGTPAHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGIADTSGNNPGSIEVGAKPPEVKEKLPVKRSKGSASGGSLNMWITGKNNELGKTTGESANGIHSKSGDSASDGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSAHAPQNGVHSRPQALVNQTMPTIPISTSSAPGAVPGPTTNLNIGMDYWGTPTSSTIPALHGKVSSTAVAGGMITAGSRDGVQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLRAEVSRIRSEYEQLRSENASLKERLGEIPGVATPGNEDVRSGQNDQHVSNDTQQSRQKEAVQGVH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00286 413 Gene3D - 307 360 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 364 413 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 14 36 - -
Phco8g00286 413 Pfam bZIP transcription factor 304 366 IPR004827 GO:0003700|GO:0006355
Phco8g00286 413 MobiDBLite consensus disorder prediction 112 223 - -
Phco8g00286 413 Pfam G-box binding protein MFMR 4 92 IPR012900 -
Phco8g00286 413 SMART brlzneu 304 368 IPR004827 GO:0003700|GO:0006355
Phco8g00286 413 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 306 369 IPR004827 GO:0003700|GO:0006355
Phco8g00286 413 SUPERFAMILY Leucine zipper domain 307 364 IPR046347 GO:0003700|GO:0006355
Phco8g00286 413 Coils Coil 324 372 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 306 328 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 1 36 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 141 197 - -
Phco8g00286 413 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 311 326 IPR004827 GO:0003700|GO:0006355
Phco8g00286 413 MobiDBLite consensus disorder prediction 385 413 - -
Phco8g00286 413 MobiDBLite consensus disorder prediction 207 223 - -
Phco8g00286 413 Pfam Disordered region downstream of MFMR 131 271 - -
Phco8g00286 413 CDD bZIP_plant_GBF1 309 359 IPR045314 GO:0003700|GO:0006355
Phco8g00286 413 PANTHER G-BOX-BINDING FACTOR 3-RELATED 10 405 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00286 Phco-Chr8 2635595 2641746 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco8g00286 MFMR_assoc 2.4e-56 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00552 4 4060690 4072141 Phco8g00286 8 2635595 2641746 PCT