Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00273 ATGGAGAAACTGAAAGTATCTACAAAGCATGATTCTGATGGCAGCAGTGATCAGGCAGATTCATTTCCAATATTCGAATTACGTGAGAGTCAAAATATTGGACAGCAGAGGATCAGAAGAGAGGAAGATGATACAAAAGCTGTGAAATTGGATGGAGGTTCTGCAATTGCTTTCTCTAATTCTGTAAGCAGTAAGGAATCTGCCAACAAGTGGATGGCATTTGCTGGGAAGCCTAATTTAGCAGTTGATGGCAACTCAGCAATCAAGGATAAAAGTACAATTGAAGACAATTACTTGGGGAATCATCTAAAAGAGAAGTCCTCTTCTGATCAAAAGATTTTAACTGAAGCAACCATAGCTGAGAGAGCTGCTGAATGGGGTCTTGTGGTGAACTCTGGAAACTTCAGAGCAATGGGGGAAGAAAATACTGGTGCCTCTTTCGATGGTGACAGAACCAGAAACTTGTCTGATAGATTTGCTGAATCAACGCGGACTTCTGCGGAGTCAAATTTTGGATCTGATTCAACATCTGGATTGTTCCCAAGGGTGTCACAAGAGTTGAAGGAAGCATTGGCAACGCTGCAACAGACATTTGTTGTCTCAGATGCAACAAAGCCAGACTGCCCAATCATGTATGCCAGTAGTGGCTTTTTCAGTATGACTGGCTATTCTTCAAAGGAGATTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGACACAGACAAGAATGAAGTGGAGAAAATTCGGGATGCAGTTAGAAATGGGAGAAGTTATTGTGGCAGACTATTAAACTACAAGAAAAATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAAAGATGATCAAGGCAATACTATCAAATTCATCGGAATGCAGGTTGAGGTGAGCAAGTACACTGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGGTTACCCAAGTCATTAATTCGATATGATGCTCGTCAAAAGGAGACAGCTTTGGGTTCCATCACCGAGGTTGTGCAAACTGTTAAGGACCCAAAATCTATTATTAATAATAGGAATGATGATACTGTCTCCAAGCAAGAAGAGGAAGAGAAAATGAATCTTGATTTTGTTTTGCCAAAGTCTGCTGATGCTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTCAACATCCAAAGCATGACTTCTAATCAGGAAAAGAGCAGGACTTCACGATCAGGACGGATTTCTATCAAGGGTTTTAAAGGGAAATCACAGAGTTCTGCTGGGAGAGATGAGGAGAAGTCCATTGTTGAACCTGAGGTTTTGATGACCAAAGAAATAGAGTGGTCGAACAATTGGGAGCACTCACTAAGAGAGAGGGACATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGAGGATAGAAAAGAACTTCGTGATTTCTGATCCTAGACTGCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACGGAATATACAAGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGACCAGGCAACTGTTTCCAGGATTAGGGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGCGGAAAGAAGTTTTGGAATTTGTTTCACTTGCAACCTATGCGTGATCAAAAGGGTGAACTTCAATACTTCATTGGCGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGTTTCAGAGTGCTAAGCTGGTGAAAGCAACTGCAGAAAATGTGGATGAAGCTGTTCGAGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTCTTTCCACGACCTCACAAAAAGGATAATCCTTCTTGGATAGCAATACAAAAGGTTGTTGCTAGAGGCGAAAAAATTGGCCTCCAACATTTTGTGCCCATAAGGCCACTAGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAAGCAATGGAAAAGTCTGTCATGCTAAATCGTAATAAGGTTCACCGATCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTTCTGACTTCTGCCATGGGGGAGAATTGTTTGCATTGCTTGACAAACAACCAATGAAAATTTTCAAAGAAGAATCATCAAGATTCTATGCGGCAGAGGTTGTCATTGGCTTGGAATATCTCCACTGTCTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCACGTTGTATTAACTGATTTTGATCTATCATCTATGACATCGTGTAAACCCCAGGTTGTGAAGCAAGCATTACCTGGTAAAAGAAGATCACGAAGTGGACCACCACCAATACTAGTTGCAGAGCCTGTTACACAATCAAACTCGTTTGTTGGAACTGAAGAATATATTGCCCCTGAAATTATAACTGGAGCTGGGCATACTAGCGCCATAGATTGGTGGACCCTTGGTATCTTATTGTATGAGATGCTCTATGGCCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAACAAGTCGTCTAGGTTCAACCACTGGTGCAAATGAAATCAAACAACACCCTTTTTTCCGTGGAATCACTTGGCCTCTAATCCGCAACATGACTCCACCCCCATTAGATGTTCCTCTGAAATTGATAGGAAAAGAACCAGTGGCGAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAACTCGATTGATATGGATATCTTTTGA 2991 0.4146 MEKLKVSTKHDSDGSSDQADSFPIFELRESQNIGQQRIRREEDDTKAVKLDGGSAIAFSNSVSSKESANKWMAFAGKPNLAVDGNSAIKDKSTIEDNYLGNHLKEKSSSDQKILTEATIAERAAEWGLVVNSGNFRAMGEENTGASFDGDRTRNLSDRFAESTRTSAESNFGSDSTSGLFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEIIGRNCRFLQGPDTDKNEVEKIRDAVRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKETALGSITEVVQTVKDPKSIINNRNDDTVSKQEEEEKMNLDFVLPKSADAGNTSTPGRQPSPLNIQSMTSNQEKSRTSRSGRISIKGFKGKSQSSAGRDEEKSIVEPEVLMTKEIEWSNNWEHSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEFQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKDNPSWIAIQKVVARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLISDFCHGGELFALLDKQPMKIFKEESSRFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSSMTSCKPQVVKQALPGKRRSRSGPPPILVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGITWPLIRNMTPPPLDVPLKLIGKEPVAKDIKWEDDGVLVNSIDMDIF 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00273 996 Gene3D PAS domain 197 367 - -
Phco8g00273 996 FunFam Putative LOV domain-containing protein 197 353 - -
Phco8g00273 996 SUPERFAMILY PYP-like sensor domain (PAS domain) 204 296 IPR035965 -
Phco8g00273 996 ProSitePatterns Protein kinases ATP-binding region signature. 667 690 IPR017441 GO:0005524
Phco8g00273 996 SUPERFAMILY PYP-like sensor domain (PAS domain) 479 575 IPR035965 -
Phco8g00273 996 SMART pac_2 537 579 IPR001610 -
Phco8g00273 996 SMART pac_2 260 302 IPR001610 -
Phco8g00273 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Phco8g00273 996 Gene3D PAS domain 450 613 - -
Phco8g00273 996 ProSiteProfiles PAC domain profile. 257 311 IPR000700 -
Phco8g00273 996 Gene3D Transferase(Phosphotransferase) domain 1 745 962 - -
Phco8g00273 996 CDD PAS 483 575 IPR000014 -
Phco8g00273 996 MobiDBLite consensus disorder prediction 1 16 - -
Phco8g00273 996 SUPERFAMILY Protein kinase-like (PK-like) 639 968 IPR011009 -
Phco8g00273 996 Gene3D Phosphorylase Kinase; domain 1 660 744 - -
Phco8g00273 996 SMART serkin_6 661 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00273 996 ProSiteProfiles PAC domain profile. 534 588 IPR000700 -
Phco8g00273 996 NCBIfam PAS domain S-box protein 210 300 IPR000014 -
Phco8g00273 996 NCBIfam PAS domain S-box protein 486 577 IPR000014 -
Phco8g00273 996 PANTHER FLIPPASE KINASE 1-RELATED 175 963 - -
Phco8g00273 996 ProSiteProfiles PAS repeat profile. 460 533 IPR000014 -
Phco8g00273 996 MobiDBLite consensus disorder prediction 1 24 - -
Phco8g00273 996 FunFam LOV domain-containing protein 660 744 - -
Phco8g00273 996 MobiDBLite consensus disorder prediction 369 432 - -
Phco8g00273 996 SMART pas_2 462 531 IPR000014 -
Phco8g00273 996 SMART pas_2 185 254 IPR000014 -
Phco8g00273 996 ProSiteProfiles Protein kinase domain profile. 661 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00273 996 ProSiteProfiles PAS repeat profile. 183 256 IPR000014 -
Phco8g00273 996 FunFam LOV domain-containing protein 449 613 - -
Phco8g00273 996 Pfam PAS domain 204 300 IPR000014 -
Phco8g00273 996 Pfam PAS domain 483 575 IPR000014 -
Phco8g00273 996 Pfam Protein kinase domain 664 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00273 996 MobiDBLite consensus disorder prediction 376 419 - -
Phco8g00273 996 FunFam Putative LOV domain-containing protein 745 959 - -
Phco8g00273 996 CDD PAS 210 299 IPR000014 -
Phco8g00273 996 CDD STKc_phototropin_like 659 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00273 Phco-Chr8 2513821 2529652 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco8g00273 Pkinase 2.3e-61 CL0016