Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00263 ATGTCCCAAGATAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCAAAATATCCATATTCTCATTAAGCCAACTACTCCATTCACAGATTTACACTCATTGACTCAGATTCAGCCTCTGCCTCAACCCATCATCATCATGAATGGACTTGAAGAATCAACTAATTATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACTGACTGACCCTCAAGAAGATGGTAATGATACTCCAAGAAACATATGTAAAAATCCTTCACTGAAACTGGTTACCAAAGTAGTTCATAGGACCAACGAGCACAGGAATGCTAAAAGAAATATTGATCAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGTAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCAATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAACAAGCACTCAGCTCTGCTGTATTGTCAGAAACCTGTGACTCCTGATGGTGCATCTGCGATCCAGACACATTCCAGTGCTTCTAGTGATGATATGATTCTCTCATCCAATGATCTCTCTGTGACTTCAAGACCTATCAAAGAAAGGGAGGAAACTCCTCTTAGTGAATCCTTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACATTTCCACTATCAAAGATGATGGTGAGGACCCTTCCAGCAACTCTATTAGATCTGATGAGATAGAGCAGGTTGGTTTGGCACAACACTCTAATGGTTTAACTCCCTTACATCCATTTCATTATCATCCTGTCCCTTCATGGTCTTATCAATGGAATCCATGCTGGAATGTCAAGGAGTTTAGGTCCAGTAGCACTAGTTCTAGTCCTCCTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACAGTAGTGCTACCTGCGGCACCTTATTCGTATTCAGGTTTCATGTCAAGCTTAGCTGGTCAAAAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGCCTTCATCTTCTGGTAGCATCAGTTCTAATTCTGGTACTAGATCCCCAACCTTGGGAAAGCATTCTAGAGATGGAAGCACACCGCAGGAAGCCACAATGAAACAGAATCTTTGGGTGCCTAAGACTGTCAGAATTAACGGCCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTGGGAACAAAATCTGAGCAGAGCAAAATCATTATAAAAGGAAGTGTCTTTAAATCATTTGAATCTAAGACAAGTGCTGATCATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCTTGTGA 1440 0.409 MSQDRDSAIKLFGADIQNIHILIKPTTPFTDLHSLTQIQPLPQPIIIMNGLEESTNYEVDVPLNEEVSSKLTDPQEDGNDTPRNICKNPSLKLVTKVVHRTNEHRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALLYCQKPVTPDGASAIQTHSSASSDDMILSSNDLSVTSRPIKEREETPLSESLETVLSLNGQRKFDVDISTIKDDGEDPSSNSIRSDEIEQVGLAQHSNGLTPLHPFHYHPVPSWSYQWNPCWNVKEFRSSSTSSSPPYTGSPTMMAVSGFSIPTVVLPAAPYSYSGFMSSLAGQKEESSLIGSAFSGISLPSSSGSISSNSGTRSPTLGKHSRDGSTPQEATMKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEQSKIIIKGSVFKSFESKTSADHNQIRRTNPAAFSRSESFQESL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00263 479 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Phco8g00263 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
Phco8g00263 479 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Phco8g00263 479 MobiDBLite consensus disorder prediction 452 479 - -
Phco8g00263 479 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Phco8g00263 479 MobiDBLite consensus disorder prediction 372 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00263 Phco-Chr8 2399787 2402365 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco8g00263 zf-Dof 3.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00263 8 2399787 2402365 Phco8g00263 8 2399787 2402365 ECH