Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00201 ATGGCCATGGAGAATGCTGGTCGTAAGAACAACAAGCTTAAAAGAAGTTCTGAGGGAATATTTCAAGTGAATGAAGAGGTGGAGGTGAGGCGCGTAGAGGAGGGGTTCCTAGGATCATGGCACCCTGGGATAGTTATCAAGTGTGGGATACCAAAGTGCTATGTCAGATACAAGAATGTTCTAAACAGTGACGGTTCGGATTATCTTGTGACTGTAGTGAGGATTTCAAAAGCATCGGAATCTTCAAGATATAGCGTGCGCGGATTCATTCGACCACCGCCACCTTTGATTGAGTTTGAGAGATTTGACCTTAAGTATGGTTTGTGTGTGGATGTGAACTGTCAGGAAGCTTGGTGGGAAGGAGTCATATTTGATCAAGGTGATGGAATGCAGAAGAGGAGTGTGTTTTTTCCAGATTTGGGTGATGAAATGCAGATTGAAATTCGTCAACTGCGGATTACTCAGGACTGGAGTGAAACTACTCGCCAGTGGGAGAGAAGAGGAAACTGGGCGTTTCTTGAATTGGTTGAGGAGTGTCAGAATGGATCATTTGTTGCTGTTTCAGCTAGACAAATATGGTATGATGTACTGCAGAAAATGAAAATTGGCATGAGGGGAGAGTGGGCATACAATGACAAGAACTTATACAGAGATGCTGTGAGGCGTATCGTTAATGGCTACTCAGGTCTTACGGAGAACCAAGTTTTCTCAGGCTTGGACCTTCCTGGGAGTGTAGTTGATGGAAGACTTGAGCAGGAATCAGTTGAACCAATGAATATTGACTTAAACATGGCCTTGTTTGATAAAGATAATCTTTTCGAGAAAGAACCTGCTCCTCTTGTTAACCAGGTTTTACCTGAGTTTGAAATGCAAAGTGCCCTTGAAGTTGCTCCTGAAGTAGTTTCAGGTGACAGTTATGAAAGAAGTAAATCATCTGCAAATCAAAAGTGGAAAAGCTCAAGAGATTCAAAGGCCAAAATATGTAAGAGTCAAAGCAATTTGGAACAAGGATCAAGGAAGAGGGTGACAAAGGTGTCTGCTCCTAGTCTTTTACCTGACCACAAACCTCTAAATATTTTGTCATGGTTGATGGACAACAAGATGGTGTTTCCAAGGTCTACCGTGTATTATTACAATGAAGAAGCATGGTACCATGCAGCCTCTAGTTGGACTAGAGGAAAAATAACTCGCAATGGAATCAAGTGTTACTGTTGTGACATAATATATAGTTTCGTTGGGTTTGAATATCATGCTAGTGGCATCAGTACCAGCACACCCTCTGCTTGTATTTTCTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATAGAAATAATGCAAAATCTGGTGACAAGAGAAACTAGTGAAAAACCTTGCAGTAATTTGCTTCTAGATGATAATGACTTAATTTGTTCTCTTTGCCTCTATGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTTCACATGACATGTCTTGGATTGGAGCATATCCCTGATGGTCATTGGCTTTGCCCACAATGTCGTTGCCGTAGTTGCCGCCAAAGCAAACTAGATGAAAATGAGGAAGCACATGCTGCCCTTACTTGTGCTCAGTGTGAACATAAATACCACGTTTGGTGCCTGGAGAATGGAGGTTTAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGTGAACAGATACACGAGGGACTTTTTCAGCTATTAGGAAAGCCAGTTTCAGTGGGCGTGGACAATCTAACATGGACATTGGTGAAGTTTATTGAGCCTGAGTGTGATGATCTTGGTAGAATTAGAAATGACAGCTCAATGGCAGAAAGTTACACCAAACTCAATCTTGCTCTTTCGGTGATGCATGAATGTTTTGAGACCCTTAAGCAAACTTTATCTAGCAGAGATATCATTGAAGATGTTATATTCGGCAGAAGGTCAGAGCTCAAGCGATTAAATTTCCAGGGTTTCTACACTGTACTACTTGAGAAAAATGAAGAACTGGTTTCTGTGGCAACTGTTAGGGTCCACGGGGAGAAGGTAGCAGAAGTACCTTTCGTTGGTACCAGATTACACTATCGTCGACATGGATTTTGTCGCATTCTGATGAATGGCCTTGAACAGTTTCTGATGCAATTAGGTGTGGGGAGGCTTGTTTTGCCGGCTGTTCCTAGTACGCTCAAGACATGGACTGACTCATTTGGTTTTGCAAAGATGACTGATTTTGAGAGGTCTAAATTTCTGGACTATACCTTCTTAAATTTTGAGGGTAGCATCATGTGCCATAAGCTGCTGATGAGGATTCCACCTCCATATTCAGAATCACAACCCAGATGTGATTATTTACCTCAAAGTAGTGTTGACCTCACTAAGTCTATTTCAGTATCAGAAGGAGGGATGTTGTATCAGCAAACCGGGAATACTTGTACAGGCAACAACAATGATCGTGTTACTATTGCTACTGTTCCAATAAACATGGAGAAAGAAATTTCTGGTGATCAACAACAGTATTTAAATGGAAGAAGCTCACAGTTCGTTCATGGAAGCAGCTCACAGTTCGTTCATGAAAAACAAGGTGACGAGTACAATAGTGAGTATACCGGAAAGAAAGTAAGTGTGGCACAACAATTCTATAGTGCAATGCAGCTATGGCACATTTGTTTACAGCAGGGATGCATAGTTATTGGGGTGTTTGAGCAAGCCTTGGAACCTATAAGAGAGGTTGAGTACTTGGAGCAATGGACTATGAAAAATGGTGATGAATTGTGCAGGGGCAGAGGTTTTTTGGTTATTGTAGCTAGTTTGTGGTGTACTGAAAATCCTAAGCCTATGGGTAGTGAGGGTATTTTGTTTTCTAGAAATCCTTAA 2877 0.4126 MAMENAGRKNNKLKRSSEGIFQVNEEVEVRRVEEGFLGSWHPGIVIKCGIPKCYVRYKNVLNSDGSDYLVTVVRISKASESSRYSVRGFIRPPPPLIEFERFDLKYGLCVDVNCQEAWWEGVIFDQGDGMQKRSVFFPDLGDEMQIEIRQLRITQDWSETTRQWERRGNWAFLELVEECQNGSFVAVSARQIWYDVLQKMKIGMRGEWAYNDKNLYRDAVRRIVNGYSGLTENQVFSGLDLPGSVVDGRLEQESVEPMNIDLNMALFDKDNLFEKEPAPLVNQVLPEFEMQSALEVAPEVVSGDSYERSKSSANQKWKSSRDSKAKICKSQSNLEQGSRKRVTKVSAPSLLPDHKPLNILSWLMDNKMVFPRSTVYYYNEEAWYHAASSWTRGKITRNGIKCYCCDIIYSFVGFEYHASGISTSTPSACIFLKDGKSLLECQIEIMQNLVTRETSEKPCSNLLLDDNDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGHWLCPQCRCRSCRQSKLDENEEAHAALTCAQCEHKYHVWCLENGGLDLSRCSENWFCGKSCEQIHEGLFQLLGKPVSVGVDNLTWTLVKFIEPECDDLGRIRNDSSMAESYTKLNLALSVMHECFETLKQTLSSRDIIEDVIFGRRSELKRLNFQGFYTVLLEKNEELVSVATVRVHGEKVAEVPFVGTRLHYRRHGFCRILMNGLEQFLMQLGVGRLVLPAVPSTLKTWTDSFGFAKMTDFERSKFLDYTFLNFEGSIMCHKLLMRIPPPYSESQPRCDYLPQSSVDLTKSISVSEGGMLYQQTGNTCTGNNNDRVTIATVPINMEKEISGDQQQYLNGRSSQFVHGSSSQFVHEKQGDEYNSEYTGKKVSVAQQFYSAMQLWHICLQQGCIVIGVFEQALEPIREVEYLEQWTMKNGDELCRGRGFLVIVASLWCTENPKPMGSEGILFSRNP 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00201 958 SMART PHD_3 512 564 IPR001965 -
Phco8g00201 958 SMART PHD_3 470 511 IPR001965 -
Phco8g00201 958 CDD NAT_SF 663 723 - -
Phco8g00201 958 Pfam PHD-finger 470 512 IPR019787 -
Phco8g00201 958 Gene3D - 601 773 - -
Phco8g00201 958 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 658 741 IPR016181 -
Phco8g00201 958 SMART agenet_At_2 19 98 IPR014002 -
Phco8g00201 958 SMART agenet_At_2 102 159 IPR014002 -
Phco8g00201 958 Pfam Acetyltransferase (GNAT) family 646 734 IPR000182 GO:0016747
Phco8g00201 958 PANTHER PHD FINGER PROTEIN 12 144 853 IPR042163 GO:0003714|GO:0045892
Phco8g00201 958 Pfam Tify domain binding domain 393 444 IPR032308 -
Phco8g00201 958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 529 IPR013083 -
Phco8g00201 958 Pfam Agenet domain 25 95 IPR008395 -
Phco8g00201 958 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 614 774 IPR000182 GO:0016747
Phco8g00201 958 ProSiteProfiles Zinc finger PHD-type profile. 468 513 IPR019787 -
Phco8g00201 958 SUPERFAMILY FYVE/PHD zinc finger 451 511 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00201 Phco-Chr8 1869194 1878880 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco8g00201 Acetyltransf_1 0.00031 CL0257