Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00197 ATGTACGAAGAAAGTAGTTGCTTTGATCCCAATGGGATGGTGGCAGAAGACTGTTTTTCCCAGATGGTTTCAAAATCAGAGGCAGTTATGTCTGTGAGTAGCATACAGCCCCAAAACACCTTTGGGATGGAAAACTTAGCCTACACATATTCCAGTGGAGAAGATGCTTCAGCTGTTGCTATGGAAATCATTGCACACCCGCAACAAAACTCATACAATCAAGTCAATAACTTGAACCCCCAGTTTGTGCAAATGGTGAACAACCATGCTTCATGTGAGGACCTTTATTCTTTCCCCCCTCACTCCTCCACACTTGAGAGGGGTCACCATGATCACCAATTTCCTTACTCCACACCAACACCAGATCTCCTCAACCTTCTCCACTTGCCAATCACCTTTGAAAACCAAAGCAGCAATCTTCCAAAACCCTCTGGCCCTCTGGGAACAGCGGACAGCACAAACGTCTCCTCTGTTTCCTATGACCCTTTCTTGCATCTCAACCTGCGAGCACCTCCCCCAGCTCTGAGAAATGATTTTGCCTTTGGAGGAGGAGGGGGTGCCATAGAAGGCAGTGGAATTGCCTACCAAGATTTTGGAAATGGGGTGGTGGAGTTAACTCAAGATGTTGGGAAAAAGAGAGGGGGGAAAAGGACCAAGCAGTTTACCAGTACTACTACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGCGATAGAGCATCCGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTTAAGAGGACAGTGGACGAACTAAAACTATTGGTGGAGAAGAAAAGGCACGAGAAACAAAGGGTAGTAGTGATGATGAGGCACAAGGTTGAAACTGAAGGGCAAGAGGACACGAATCTCGACCTAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAATCCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTAACAATCAAGCTTGTTCAGAGGAAGAAGATGGATTGCTTGGTGCATGTCTCACAGGTTCTTGATCAACTCAACCTCGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTGTTCAATACCAAGATGTGTGACGGTTCTTGTGTTTATGCAAGTGCTATAGCCAACAAGCTCATTCAGGTCATGGACACAAGTTTGGTAGCAGAGTCACTCAATTGA 1251 0.4556 MYEESSCFDPNGMVAEDCFSQMVSKSEAVMSVSSIQPQNTFGMENLAYTYSSGEDASAVAMEIIAHPQQNSYNQVNNLNPQFVQMVNNHASCEDLYSFPPHSSTLERGHHDHQFPYSTPTPDLLNLLHLPITFENQSSNLPKPSGPLGTADSTNVSSVSYDPFLHLNLRAPPPALRNDFAFGGGGGAIEGSGIAYQDFGNGVVELTQDVGKKRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRHEKQRVVVMMRHKVETEGQEDTNLDLDDGSYNESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKMDCLVHVSQVLDQLNLDLQHVAGGHIGDFCSYLFNTKMCDGSCVYASAIANKLIQVMDTSLVAESLN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00197 416 Coils Coil 264 284 - -
Phco8g00197 416 CDD bHLH_AtMYC1_like 225 283 IPR045896 -
Phco8g00197 416 Pfam Helix-loop-helix DNA-binding domain 226 267 IPR011598 GO:0046983
Phco8g00197 416 Gene3D - 210 297 IPR036638 GO:0046983
Phco8g00197 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Phco8g00197 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 287 IPR036638 GO:0046983
Phco8g00197 416 SMART finulus 224 273 IPR011598 GO:0046983
Phco8g00197 416 PANTHER TRANSCRIPTION FACTOR BHLH91 1 411 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00197 Phco-Chr8 1821148 1822745 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00197 HLH 4.6e-08 No_clan