Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00195 ATGTCAACCCCGTTATCATCATCATCATCATCACCGTCACCGTCACCGGCGTCATTTACCACCGCACCACCACCACAGTTATCTTCTACTACAGTACCTCACAATTCAACTTCACCATCACCCTCACCATTGCCATCTCAGTCCTTACCTCCGGCTACTCCTCCACTATCACTATCACCACAATCGTCAAGTTTGCCACCACCATCAATTTCTTCCCCTCCGCCACCTCCTCAGAGTTATTCTCCTTCTCCAGCATCATCTGCTACACCTGTAAGTAGCAGTGCCCCTCCTCCACCTTCTAGGACAAGTCCTTTAGATTCTCACTCTACTCCATCACACACTTTTGGATTGGCTCCACCACCTCCATTAGCAAAACATTCTCGCCCAGGAAGCAGTGGTGACACTAGTGCAGCGGCTTTTGTTGGTGTGGTGACAGCAATTGTATTGCTTGGCTTCATTGGCACTGCTATCTGGTGCCTGAAGAGGCAAAAGAAAAGGATTTCTAAGAGTGGTGGTTATGACTTCCCATCCCCTCTTTGTTCAACATCTCAGTCAGATTTGTCCTTTATTACCCGTTCTTCAGCTCATGGTATGCAAAGAGCTTCGGGCGGTAATACACCACCAGGACTGAGCAACTCAAGGCCACTCTTTGCATATGAAGAACTAATGAAGGCCACAAACAATTTTTCAACTCAAAATCTTTTGGGTGAAGGAGGATTTGGTTGTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTGCAAATTGCAGGAAGTCAAGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGCATACATCATCGTCATTTAGTTTCCTTAGTAGGATACTCCATTTTAGACAGCAAAAGACTACTTGTCTATGACTATGTCCCCAACAGTACCCTTTATTTTCATCTTCATGGAGAAGGTATGCCAGTGCTGAAGTGGACAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAGAGGAATATCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCAGCAAACATTCTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAGATTAGCAGTTGATGCAAATTCACATGTAACCACACGTGTGGTGGGAACTTTTGGATATGTTGCGCCTGAATATGTATCAAGTGGGAAATTGACCGAGAAGTCAGATGTATACTCTTTTGGAGTAATGCTTTTGGAGCTCATTACTGGAAGGAAGCCAGTGGATGTATCTCAACCAGTAGGTGAAGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTAAATGATGCACTTGAGAGTGAGGAATTTGAGGTCTTGACAGATCCAAAGCTAGGAAAAAAGTACGTTGAAAGTGAAATGATTTGCATGGTTGAAGTTGCTGCAGCTTGCGTGCGACATTCATCTGCCAGAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCAACGTGTGATCTTTCAAATGGAATGAGAGTTGGTGACTCTACGCAGCAATCAGCAGAAATAAGATTATTAAGTAGAATGGCATTTGGTAATCATCAAGATTACAACTCAGAATTTTTTAGCCACACAAGTTTGAATACGTAA 1659 0.4394 MSTPLSSSSSSPSPSPASFTTAPPPQLSSTTVPHNSTSPSPSPLPSQSLPPATPPLSLSPQSSSLPPPSISSPPPPPQSYSPSPASSATPVSSSAPPPPSRTSPLDSHSTPSHTFGLAPPPPLAKHSRPGSSGDTSAAAFVGVVTAIVLLGFIGTAIWCLKRQKKRISKSGGYDFPSPLCSTSQSDLSFITRSSAHGMQRASGGNTPPGLSNSRPLFAYEELMKATNNFSTQNLLGEGGFGCVYKGSLPDGREVAVKQLQIAGSQGEREFKAEVEIISRIHHRHLVSLVGYSILDSKRLLVYDYVPNSTLYFHLHGEGMPVLKWTNRVKIAAGAARGISYLHEDCNPRIIHRDIKSANILLDYNFEARVSDFGLARLAVDANSHVTTRVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDVSQPVGEESLVEWARPLLNDALESEEFEVLTDPKLGKKYVESEMICMVEVAAACVRHSSARRPRMGQVVRAFDGLATCDLSNGMRVGDSTQQSAEIRLLSRMAFGNHQDYNSEFFSHTSLNT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00195 552 SUPERFAMILY Protein kinase-like (PK-like) 206 500 IPR011009 -
Phco8g00195 552 Gene3D Phosphorylase Kinase; domain 1 198 304 - -
Phco8g00195 552 SUPERFAMILY beta-sandwich domain of Sec23/24 23 113 - -
Phco8g00195 552 FunFam Proline-rich receptor-like protein kinase PERK8 203 304 - -
Phco8g00195 552 Gene3D Transferase(Phosphotransferase) domain 1 305 519 - -
Phco8g00195 552 SMART serkin_6 229 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00195 552 FunFam proline-rich receptor-like protein kinase PERK8 305 516 - -
Phco8g00195 552 CDD STKc_IRAK 235 505 - -
Phco8g00195 552 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 147 532 IPR047117 -
Phco8g00195 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Phco8g00195 552 Pfam Protein kinase domain 230 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00195 552 ProSiteProfiles Protein kinase domain profile. 229 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00195 552 MobiDBLite consensus disorder prediction 1 37 - -
Phco8g00195 552 MobiDBLite consensus disorder prediction 1 135 - -
Phco8g00195 552 ProSitePatterns Protein kinases ATP-binding region signature. 235 257 IPR017441 GO:0005524
Phco8g00195 552 MobiDBLite consensus disorder prediction 38 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00195 Phco-Chr8 1809116 1812357 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco8g00195 Pkinase 3.7e-44 CL0016