Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00189 ATGGATTCCTCTCTCTCTCTGCACACTCCATCAAACCACAATGCCTTCCAACAACAACAACCGCAACCCTCACATTCGCAACCCCAACTCTTAGTTCCCAAACCCGAACCCTTCTGGGCCGCCTTAAACCACGACGATATCGGCGACCAACTTGACCTACTCACCGAGTTCAACCGAGTCACCGAGTTGTTTCACCTTGCATTCGGAGGCACCAATGTCGTCATTCCCCCCAACTCCTTCGGACCTCAACCCGCCGCGCCTGCATGCTCCCACCTGCTTCCTTCTGCGGATGTCGATTCCGCGGTCCAGGAAGACCCCAATTTGTCCACCACCGCCAGCGACGCCTCGCGCGCGATCGTCCCCGTCGCGGACCTCACGGTGAGGGTGGCGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGCGGGTGATGGGTCTATCGGCGAGGGAAGATGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTTTACGACTCGCTGCGCGTGTATACCGCTGTGGAGGAGGAGAAGCGGGTGGCCGCCTTGGGGGCGGCGAAGGCGGCTGCGGTGAAGGAGGAGGAGGCGACAGCGGTGGAGGGCAGGACGCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGCACCGCCAGCAGCGAATCGTTGGGGCCATTCCTGGGATTTTGGTGGGGGACGTGTTCCTTTTCAGGATGGAGTTGTGTGTGTTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGGAAGTATGAGCTCTTGCGGGGAGCCTATAGCCACCAGTGTCATTGTGTCTGGAGGTTATGAGGATGATTTGGATAATGGTGAGGTTATAATCTACACTGGTCAGGGAGGGCAGGAGAAGAATTCGTCTAGGCAGATTGCTGATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTGTTGATCGCTGGTTTGATGTGGGGAGGTCTGGTTTTGGAGTTTACAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAAGATGGGAAGTGCTATTTTGAAGGAAGCTAGGAGTATTAGGAGGAGTGAGTCGGATTCTAACACTGTGCATTGTCTTTCTGCTGATATGTCTAACAAGAAGGAGAATGTTGCTGTCCGGTTTTTTAACGACATAGATGATTATCGGGATCCTCTTAGCTATGAGTATCTTGCCAGGACTAGTTTTCCGCAGTTTGTGTTTCATCAGAGTGGCCAAGCTACTGGTTGTAACTGTGTGGACAGTTGTGGGGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGATTTTCCTTATACTCTTCAGGGGCATCTTGTCAAAGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGTTCTTGTCCTCCTCATTGTCGGAATCGTCTTACGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACAGCCTGGGGGGTTAGGTCCTTGGACCTTATTCAAGCCGGTACTTTTATCTGCGAGTTTGCAGGGGTTGTTTTGACTAGGGAGCAGGCGCAACTCTTCGCAATGAATGGTGACTCTTCAATATATCCTAATCGGTTTTCAGAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGACCCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTCTAGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAACTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACATCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGGAAGCTCTCTATATGTAACTGA 2037 0.514 MDSSLSLHTPSNHNAFQQQQPQPSHSQPQLLVPKPEPFWAALNHDDIGDQLDLLTEFNRVTELFHLAFGGTNVVIPPNSFGPQPAAPACSHLLPSADVDSAVQEDPNLSTTASDASRAIVPVADLTVRVAPRRKQSRQKELVRVMGLSAREDAQLRETVRRTRLVYDSLRVYTAVEEEKRVAALGAAKAAAVKEEEATAVEGRTRRLRGDLRAAGLMRERGLWLHRQQRIVGAIPGILVGDVFLFRMELCVFGLHGQIQAGIDYLPGSMSSCGEPIATSVIVSGGYEDDLDNGEVIIYTGQGGQEKNSSRQIADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYDGVYKIVDRWFDVGRSGFGVYKFKLWRIEGQAKMGSAILKEARSIRRSESDSNTVHCLSADMSNKKENVAVRFFNDIDDYRDPLSYEYLARTSFPQFVFHQSGQATGCNCVDSCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPPHCRNRLTQKGLKYRLEVFRSLQTAWGVRSLDLIQAGTFICEFAGVVLTREQAQLFAMNGDSSIYPNRFSERWAEWGDLSQVDPKYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00189 678 ProSiteProfiles YDG domain profile. 232 382 IPR003105 -
Phco8g00189 678 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 131 666 - -
Phco8g00189 678 Pfam SAD/SRA domain 231 386 IPR003105 -
Phco8g00189 678 Gene3D - 229 390 IPR036987 -
Phco8g00189 678 ProSiteProfiles SET domain profile. 522 665 IPR001214 GO:0005515
Phco8g00189 678 MobiDBLite consensus disorder prediction 1 32 - -
Phco8g00189 678 Pfam SET domain 534 665 IPR001214 GO:0005515
Phco8g00189 678 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00189 678 Pfam Pre-SET motif 417 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g00189 678 Gene3D SET domain 391 678 IPR046341 -
Phco8g00189 678 ProSiteProfiles Pre-SET domain profile. 461 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g00189 678 SMART preset_2 414 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g00189 678 SMART set_7 522 671 IPR001214 GO:0005515
Phco8g00189 678 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 72 678 IPR025794 GO:0016571
Phco8g00189 678 SUPERFAMILY PUA domain-like 214 397 IPR015947 -
Phco8g00189 678 SMART G9a_1 227 386 IPR003105 -
Phco8g00189 678 SUPERFAMILY SET domain 423 676 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00189 Phco-Chr8 1763498 1765534 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco8g00189 SAD_SRA 1.4e-47 CL0178