Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00180 ATGGAGCTATTCCCAGCACAGCTAGATTTGTCCTTGCAAATCACTCCTCCAAACAGTAAATCCACATCAAGTAATTGGAAGAGAAGCACAGAAGAGGAGATGGATTTGGGGTTCTGGAAGAGAGCTTTGGAATCCAAAACAAACACATCCTTGGTCAAAACAAACACATCCTTAGTCAAAACAGACCTCTCCCTCTCCAATCCAAGGGCTTCTTCTTCAAACACCAACACCCCCAACCCCATCCTTATCCACCACTTCCAAAACAACAACGGTAATAATAATAATAATGGCAACCCCATCCAACAAAACCATTTCTTTCACCACCAAATACATAGCCAAGACCTAGGTTTTCTGAGACCCATAAGAGGAATCCCAGTGTACCAAAATCCTCCTCTCTCGTTTCCTCATCCACAGCCCCTACTACATGCTCCATCCAACACACCCGCACCTTCAACCCCTTTCCTTTCCCAAGCTCTCATCAAGTCAAGGTTCCTCTCACGCTTTCCTCCCAAGCGTAACATGAGGGCTCCTCGGATGCGTTGGACTACCACACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTCACTTTAGCACATGTTAAATCTCACCTGCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGGCAATGTGATACTTATGATAATGGCTCTTCTGGAGATACTTCTGAAGACTTCATGATTGATACAAACTCTCCAAGGATTAGGCAGGCAAGAACAAGTCTTAATCAAGATAATGAAAATGGTTGCCTTTGGAACTCTTCAAGCAGGGAAGCTTGGTTGCATGGCAAGCCAAAGGTTGATTCTATTGGGAACGTGCCTTCTGTTGAGGGAATGGATCCAAAGGGCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAAACACTCCAGAAGCAAGTGCCAAGAAGCCAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA 1053 0.4501 MELFPAQLDLSLQITPPNSKSTSSNWKRSTEEEMDLGFWKRALESKTNTSLVKTNTSLVKTDLSLSNPRASSSNTNTPNPILIHHFQNNNGNNNNNGNPIQQNHFFHHQIHSQDLGFLRPIRGIPVYQNPPLSFPHPQPLLHAPSNTPAPSTPFLSQALIKSRFLSRFPPKRNMRAPRMRWTTTLHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQCDTYDNGSSGDTSEDFMIDTNSPRIRQARTSLNQDNENGCLWNSSSREAWLHGKPKVDSIGNVPSVEGMDPKGQSNEISDGNSSSNTPEASAKKPNLDLEFTLGRSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00180 350 MobiDBLite consensus disorder prediction 296 350 - -
Phco8g00180 350 MobiDBLite consensus disorder prediction 318 335 - -
Phco8g00180 350 MobiDBLite consensus disorder prediction 11 25 - -
Phco8g00180 350 Pfam Myb-like DNA-binding domain 178 229 IPR001005 -
Phco8g00180 350 SUPERFAMILY Homeodomain-like 174 230 IPR009057 -
Phco8g00180 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 177 230 IPR006447 GO:0003677
Phco8g00180 350 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 9 349 IPR044847 GO:0000976|GO:0006355|GO:0010158
Phco8g00180 350 MobiDBLite consensus disorder prediction 236 261 - -
Phco8g00180 350 FunFam Myb family transcription factor 175 233 - -
Phco8g00180 350 Gene3D - 176 233 - -
Phco8g00180 350 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00180 Phco-Chr8 1593428 1598002 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco8g00180 Myb_DNA-binding 2.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00180 8 1593428 1598002 Phco8g00180 8 1593428 1598002 ECH
Phco4g00536 4 3859488 3863801 Phco8g00180 8 1593428 1598002 PCT