Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00179 ATGACACCAAACGCCAACGCGTTTCATCGCGTCTGTATTTCTTCAGAAGCGCGTTTTGGACAGCAACTTTTTTGTTTTGAACCGTACCAACCTTGCAACTACCGCTACGTGCTCACGTTTCTCACGGAGCCCTATAGGGAGCGATTTCGTAATGAAGTGGTGGGAGGAAGAGTACGTTCATCTATGGAAGCGAGAAATGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTACTACTGCCAGTGCCACTGCAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGAGGTTCTGCATCATATAGTATGAGGTTGCACGCTGATGCAGGTAGTTTTTCCCAGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTATATTATCCAACGAAGGAGGAATTTGATGATCCCTTGCTTTATTTACAAAGAATAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAACAAGCAGGGTTCGAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAAATTATACATTTCGTGATTTTGAAAAGATGGCGAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGCGAAAAGCAAATGGAATTTGAAGAAATTTTCATGGTTGCCCAAGTCTATTTTGCGGCTCCTGGAAACATCAATTCCGGGAGTAACAGAACCCATGTTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCTAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGTCAAAGATATGCACTTCTTCACAGGGTTCCTTTGCTGCCCCACGAAGAACTTTTATGCAAAGAAGCAATGCTTCTATATGCAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTGATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAAGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTTTGTTGACTGTGAATGTCACGAGCATCCAGTATGCCTTCGCCATGAATCTCTTGACTTCACCTGTGGGACCAAACGCACACTTTATCTTAGGGAAGATTCTTCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGCAAATGAAAAGTGAAAAAAACATCTATTCATGCCCTTTGTCAAACATGTTCCAGATGGCTGAGGCTAATGGATATACTCCTTATTGTGAGGTGAAATTTGATTCTGTTACTAATTTTTGTACCACCCCAAAGCTGTCAACAAATAATCAAGAGCGTATACGAAGTCAATTTGTTTCTAGACCTGAAGTATCCTCTGCTGCATCTACGCTATGTTCTCTTTCCAAACCTCCTATCGATGAGGTGCATGCTAACTTTAAATTAGGTAGTCCTGATTCTGAAGAGAATTGTGGAATATCCAATAATGCTTCTGACTCTTTTCAATCCCCTGCTCGGTATGAATGCCCTAATAAATCTATGGGCAATGTGCATAGATTGGAGAAGAAGAAGCTCATTGTGGATAACAAGAGTGATGATTCAGATTCAGGTTTTTTTTGGGTTAAGCGTCGTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGCAGTGCTACGTTTTCAACAAATTCTGTACAGCAGGAACTCAAACAGTTGAAGAAAGACCTTCGCGATGGAAGGAGTGTGCCACCAGTAGATATGAGCAAAAGAAAGGAAACGAGTTACAAATATAGTGGCGGTGTTAGTCGTAAGGTTAATGGTGGAATATCCTCGAGGGACAAAATTGCTAGGGGAAATAACATTCACGTATCCTTAAGATATAAGAAGGGGAGTAATGAGGAAGTTAGTAGACGACGACATCATTGCCAGACTGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCTTTAAAGCTCGAGACCCTTCATTTATGGGGTTAGAGAGCAGATTGAATTGA 2649 0.4145 MTPNANAFHRVCISSEARFGQQLFCFEPYQPCNYRYVLTFLTEPYRERFRNEVVGGRVRSSMEARNGLEYLKHKRLQRAKSTTASATATNIANMMNRSGGDALRGSASYSMRLHADAGSFSQRKVDKFDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFEFTTRVQPLRLAEWDTEDKVVFFMSGINYTFRDFEKMANKSFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLAKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALDFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLLYATLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAFVDCECHEHPVCLRHESLDFTCGTKRTLYLREDSSDMEAAAKRFEQEDGILKEILKQMKSEKNIYSCPLSNMFQMAEANGYTPYCEVKFDSVTNFCTTPKLSTNNQERIRSQFVSRPEVSSAASTLCSLSKPPIDEVHANFKLGSPDSEENCGISNNASDSFQSPARYECPNKSMGNVHRLEKKKLIVDNKSDDSDSGFFWVKRRSSLKAERRNISSATFSTNSVQQELKQLKKDLRDGRSVPPVDMSKRKETSYKYSGGVSRKVNGGISSRDKIARGNNIHVSLRYKKGSNEEVSRRRHHCQTDRLLHSIEVAPKRFKARDPSFMGLESRLN 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00179 882 SMART JmjN_1 141 182 IPR003349 -
Phco8g00179 882 SUPERFAMILY Clavaminate synthase-like 220 475 - -
Phco8g00179 882 Pfam C5HC2 zinc finger 539 588 IPR004198 -
Phco8g00179 882 ProSiteProfiles JmjC domain profile. 289 459 IPR003347 -
Phco8g00179 882 FunFam Lysine-specific demethylase isoform A 137 486 - -
Phco8g00179 882 Pfam JmjC domain, hydroxylase 319 442 IPR003347 -
Phco8g00179 882 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Phco8g00179 882 MobiDBLite consensus disorder prediction 787 808 - -
Phco8g00179 882 MobiDBLite consensus disorder prediction 787 806 - -
Phco8g00179 882 Pfam jmjN domain 143 175 IPR003349 -
Phco8g00179 882 Gene3D Cupin 135 464 - -
Phco8g00179 882 SMART cupin_9 289 459 IPR003347 -
Phco8g00179 882 PANTHER LYSINE-SPECIFIC DEMETHYLASE 134 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00179 Phco-Chr8 1573091 1586100 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco8g00179 JmjC 6.9e-39 CL0029