Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00177 ATGGAGGGAGCGGGCAGTGGCGGCGGAGAAGTGTCGACGGCGGCGCCGACACCGATTCCGAACGCGAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGAGTCCGACGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCGAGTTTCGTTCGCCAGTTAAACACCTACGGTTTTAGGAAGGTAGACCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACCTGCTTAAGACTATATCTCGGCGGAAACCTGCTCATGGTCATAGTCAACAACAACCACAACAAGTACATGGACAGAGTTCATCCGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAACAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAATAGACGCATAACAGAGGCAAACAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACGGCTACTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAAATAATGAAATTGGATGCTTCTCGACTAGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATAGACAGGGGAAACTCTTTGACTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAAGCGATGTCTTCTCATGTTCCATCTGCAACAAGGACTCAAGGGCATGGTCCTTCAATATCTTCTCCTACTCAAACAGATGAAATCATGCCGGACCTTTCTACAATACCAGATATAGTGGCAGGAAATATTCTTGATATTCCTCAAGAAAATTATATGGCACCAGAGACGGGTGGGGACGGATATATGGATCCTGCTTCATTTGGATTAAATATGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAACCAGACATCGATGATTTGTTGAACAATCCTAACTTTTGGGATGATATTGTGCGAACTCCGGTGTCAGAGGATATTGAAACGAATGGTGCTGAAGTATTCATGGAGAATGAGCTGCAGCCAAGTGAAACTGGATGGGAAAAATCTCAACATATGGACCTGCTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCAGAGAAAAGTTGA 1422 0.4522 MEGAGSGGGEVSTAAPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHSQQQPQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQEGIGEMEHTATSDGQIVKYQPLINEAAKAMVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEIDRGNSLTRSSGVTLQEVPPTKAMSSHVPSATRTQGHGPSISSPTQTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGLNMSLPLDFDSISPEPDIDDLLNNPNFWDDIVRTPVSEDIETNGAEVFMENELQPSETGWEKSQHMDLLTEQMGLLSSDAEKS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00177 473 MobiDBLite consensus disorder prediction 116 136 - -
Phco8g00177 473 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 MobiDBLite consensus disorder prediction 290 351 - -
Phco8g00177 473 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 305 IPR027725 -
Phco8g00177 473 Gene3D - 21 118 IPR036388 -
Phco8g00177 473 MobiDBLite consensus disorder prediction 1 26 - -
Phco8g00177 473 FunFam Heat shock transcription factor 1 21 118 - -
Phco8g00177 473 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 Coils Coil 146 173 - -
Phco8g00177 473 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g00177 473 MobiDBLite consensus disorder prediction 120 136 - -
Phco8g00177 473 SUPERFAMILY "Winged helix" DNA-binding domain 23 117 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00177 Phco-Chr8 1557712 1562534 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco8g00177 HSF_DNA-bind 6.6e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00177 8 1557712 1562534 Phco8g00177 8 1557712 1562534 ECH