Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00164 ATGGGTAGGTCACCTAGCAGTAACGAGAGTAATGTTAAGAAAGGGCCATGGTCACCAGAAGAAGATGAAAGGCTAATGGATTACATTAGCAAACATGGAAGGGGAACGTGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGCTGCAGGTTAAGGTGGGAAAACTATCTAAAACCAGATATTAAGAGAGGAAAATTAACTGAAGAGGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCTACAAGTCTTCCAGGGAGAACAGATAATGAGATCAAGAATTATTGGAATACTACCATAAGAAAAAAGCTTCTCCACATGGGTATTGATCCAGAAACTCACAGGCCAAGAACAAACTTGAATCACCTGATGAATCTTTTCCCGTTGCTTGGCATGTCAAATTTGGGCACATCAATGAGTTCTTGGACCAACCCTACTGGTTTACAAGCAGATGTCACTCAATTAGCCAAACTACAAGTGCTACAAAATATGTTACAACTTATGAACAACACTTCATTGATTAACGTGACTAATCCTTACCTCGTAGACAATCAAATTCTCAACCCACCACTTGATACATTTCTCAATGGGAGAAACACTCTCCAAGTTAGAGATCCAATGTTCAGAGATCCAGAATATCCAAACCCTCCTGGTAACAACATACCCAATCTATTCTCTCAAACACACAGTGACTATTCTCAGCAGAATATCTTCAAATCAGGGATAGAAATAGAAAATGAAAGTAATTATCAAGAAGTTCTTAGTTATACCCAAAACATTAACACTTCACAACAAAATCAAGTAGAAAATTTACTTCCAGCATTAGTTGCTTCATGTCCAAGGACAACTACCTTCAACAAAATGGAGAGCAACTATAATGCAGCACAAAAGTCTACACAGTCACCTTTCTCTACAACTTTTGAGGCTTGGGAGAAGTTTCTCATTGATGATGATGATGATACAAGCGGTTCCTACTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCATCTTCAGTTTCCTGA 1062 0.3879 MGRSPSSNESNVKKGPWSPEEDERLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLKPDIKRGKLTEEEEQLIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLHMGIDPETHRPRTNLNHLMNLFPLLGMSNLGTSMSSWTNPTGLQADVTQLAKLQVLQNMLQLMNNTSLINVTNPYLVDNQILNPPLDTFLNGRNTLQVRDPMFRDPEYPNPPGNNIPNLFSQTHSDYSQQNIFKSGIEIENESNYQEVLSYTQNINTSQQNQVENLLPALVASCPRTTTFNKMESNYNAAQKSTQSPFSTTFEAWEKFLIDDDDDTSGSYWKEILDLTSTSASSVS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00164 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco8g00164 353 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g00164 353 CDD SANT 16 61 IPR001005 -
Phco8g00164 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 301 - -
Phco8g00164 353 Gene3D - 11 67 - -
Phco8g00164 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco8g00164 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco8g00164 353 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Phco8g00164 353 FunFam MYB-related transcription factor 13 66 - -
Phco8g00164 353 SMART sant 13 63 IPR001005 -
Phco8g00164 353 SMART sant 66 114 IPR001005 -
Phco8g00164 353 CDD SANT 71 112 IPR001005 -
Phco8g00164 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco8g00164 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco8g00164 353 Gene3D - 70 116 - -
Phco8g00164 353 FunFam Transcription factor MYB39 69 130 - -
Phco8g00164 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00164 Phco-Chr8 1453503 1454784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g00164 Myb_DNA-binding 2.5e-15 CL0123