Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00162 ATGGATTACGCTCGAGACGGGAACGTGGTGCAAATAATCACAGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCGGCGATCAAGCCGATTGGGCGACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCGCGGTCGGAGCCGCCGAGCAAAAAGTCCCGGAATTCGCAGGACGGGAGCTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCACAGCATTGAGGAGCTGCGCCGCCCGCCACCAAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCAGTAATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAGCAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGACCAGGGGGTTATGCTGGTGGTGGTGGCGGTGGTAGCGGCAGTGGTAGTGGTGGGGGCGGTGGTAGTGGAAATGGTGGTGGTGGTGGTGGTGGTGGTAGCGGTGTTGCTAATGCTGCTGGGAATGGGGCTAATTCCAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAGTGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGCTTCTGTGGTTGGCAGTGACACAAGCAAGGGAGCTGCTTCAAAAGCTTCTGCTGATAACGTGGTTGCTGCAGTTACTCCTGTTGCCCATTCTGATGTGTATCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATGA 1116 0.5251 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGSGSGGGGGSGNGGGGGGGGSGVANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGASVVGSDTSKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00162 371 Gene3D - 154 201 - -
Phco8g00162 371 FunFam Zinc finger CCCH domain-containing protein 82 118 - -
Phco8g00162 371 MobiDBLite consensus disorder prediction 1 79 - -
Phco8g00162 371 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Phco8g00162 371 FunFam zinc finger CCCH domain-containing protein 15-like 244 283 - -
Phco8g00162 371 ProSiteProfiles Zinc finger C3H1-type profile. 250 278 IPR000571 GO:0046872
Phco8g00162 371 PANTHER CCCH ZINC FINGER/TIS11-RELATED 237 282 IPR045877 GO:0003729
Phco8g00162 371 MobiDBLite consensus disorder prediction 36 61 - -
Phco8g00162 371 FunFam Zinc finger, CCCH-type 155 193 - -
Phco8g00162 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Phco8g00162 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 276 IPR000571 GO:0046872
Phco8g00162 371 MobiDBLite consensus disorder prediction 209 231 - -
Phco8g00162 371 SUPERFAMILY CCCH zinc finger 248 281 IPR036855 GO:0046872
Phco8g00162 371 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Phco8g00162 371 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Phco8g00162 371 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Phco8g00162 371 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Phco8g00162 371 SMART c3hfinal6 250 277 IPR000571 GO:0046872
Phco8g00162 371 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Phco8g00162 371 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Phco8g00162 371 Gene3D - 81 117 - -
Phco8g00162 371 Gene3D - 244 282 - -
Phco8g00162 371 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00162 Phco-Chr8 1431012 1434404 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g00162 zf-CCCH 1.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00162 8 1431012 1434404 Phco8g00162 8 1431012 1434404 ECH