Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00158 ATGCAGCAGAGTCTGACAACTTGGACCACGCTCCTAGCTCGACCTCTGTCCTTTCGTGTGTCCTCATCAGCACATATGGCTAAAGTTCTGGTGTCTACAAAAACATGCACATCGAGCATCTATGAAATTGGGAAGGAAACCAAAGCATGGATGTGTGAGGAGCCTGTTTCCTTTTACTACACCTTTCTGATTCCTGAAAAGCACAAGACCTTTTCTGCCCTTCTCACGTGCTGCTTAGCGATATTTTCTATATATGGCTGTCATGACTACGAAAAAATCATGAAAACTCTGGTGGTGATTTACTTTTCTCAGCAAGTAGGGAAGTTCAGACAGGTTTCAGTTGAAGAGAGAATAACAATGGCTTTAGAAACTCTTCCATCCAATGAGTTTTCCAACTTCATGGTCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGACTCTTCGGAGGCTAGTTTCTTGGAAAGTTTTGTGAACTATCAGGAACATGAGCCCTCATTAGATAACTGCTCAATGAGGACACGAAAGCGCCAAGCCAGCGAGCCAGAAGGCATTGACAGGAAGCAGAATGTGGTGGGGGTGCAAGGTAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAGAGAATCACTCACATTACAGTGGAAAGAAACCGCCGAAAGCAGATGAATGAGCATCTTGCTGTGCTTCGTTCACTCATGCCTGAGTCCTACGTCCAGAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAAACACTGGAAGCAAGAAAGCTGCAACTTTTACAGCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACTAGGAAAACCCCCGGCCAGCTAACAAAGTTAGTATCTGGTTTCCAAAATCTCCACCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTATTCTATTCCATCAGTGCTAAGGTTGAGGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCATCGGCAGTTCATCATTTGCTTGCAAGAATTGAAGAAGAGGCTTTGCTTTGCTGTTGA 1260 0.45 MQQSLTTWTTLLARPLSFRVSSSAHMAKVLVSTKTCTSSIYEIGKETKAWMCEEPVSFYYTFLIPEKHKTFSALLTCCLAIFSIYGCHDYEKIMKTLVVIYFSQQVGKFRQVSVEERITMALETLPSNEFSNFMVYDTISATPFSSHDSSEASFLESFVNYQEHEPSLDNCSMRTRKRQASEPEGIDRKQNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEARKLQLLQQEVAQTNENTAISKLMQPPFAQFFLYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRKTPGQLTKLVSGFQNLHLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIASAVHHLLARIEEEALLCC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00158 419 Coils Coil 264 284 - -
Phco8g00158 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 267 IPR011598 GO:0046983
Phco8g00158 419 MobiDBLite consensus disorder prediction 191 214 - -
Phco8g00158 419 Gene3D - 208 288 IPR036638 GO:0046983
Phco8g00158 419 SMART finulus 222 273 IPR011598 GO:0046983
Phco8g00158 419 Pfam Helix-loop-helix DNA-binding domain 217 268 IPR011598 GO:0046983
Phco8g00158 419 PANTHER MAX DIMERIZATION, MAD 156 415 - -
Phco8g00158 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 285 IPR036638 GO:0046983
Phco8g00158 419 CDD bHLH_AtFAMA_like 219 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00158 Phco-Chr8 1415726 1418388 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00158 HLH 8.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00158 8 1415726 1418388 Phco8g00158 8 1415726 1418388 ECH