Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00145 ATGACGGAGTACCGGTCGCCGCCCACCATGAATCTCTGGACCGACGACAACTCTTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACTTCTCCTCACTTTGGCTGCCCACACCGCAATCCGCTGCCTCTACCACCACTCCGGGAGCCGACACTGCCAGAGCCCTGCCGCCACCTCCGCCGTCCCAGTCCCTTTTTAACCAGGAGACCTTACAACAGCGGCTGCAAACGCTGATAGAAGGCGCCGAAGAGAGCTGGACCTACGCTATTTTCTGGCAATCTTCTTATGACTATTCCTCCAGCACTTCCCTTCTTGGTTGGGGCGACGGATACTACAAGGGCGAGGAGGACAAAGGAAAAGCCCCCAAAGAGATGTCGTCGGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATTTCCGGCTCTTCCGCTTCCGCTGATGACGTCGACGAAGAGGTATCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTCTCAGCGGCAGCGGCCTCCCGGGCCAGGCTTTTCTTAATTCCAGCCCCGTTTGGGTCGCCGGGGCTGACCGGTTATCCGATTCGACGTGCGAGCGGGCTCGCCAGGGGCAGGTCTTTGGGCTTCAGACTCTGGTTTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCCTCTACGGAGGTGATTTTCCAGAACCCCGATCTCATGAAGAAAGTGCGGGATTTGTTCAACTTCAACAACCCAGACGCGGGTTTCTGGCCGTTGAATTGCGTAGCCACCGATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCTATTGAAATCAAGGGCACCTCTAACGCCGTTGCACCCGTTTCAGCGAATGCACCACTGAGGAAAACCATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACAGAAACCCCTAGTGCCGCCGCCGCTCACGTCCCCAACCCCAAGAACCAGGGTTTCTTCCCCAGGGAATTGAACTTCTCGAACTCCTTAAAACCCGAATCTGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCGGTGTTGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTATACCGGCTTCGAATATAAAACCTGGTGCTGTTGCTGGTGGTGGTGGTGCCAGCGGCGGTGATTCCGAAAACTCGGATCTGGAAGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAACGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCATCGCTCTTAGGCGATGCCATATCCTACATAAACGAGCTGAAGTCGAAGCTGAGTGAGCTGGAATCAGAGAAAGGGGAATTGGAGAAGCAATTGGAGTTGGCAACTAAAAACCGTTCTCGTCCTTCTCCTCCACCTGGACCACCTCCATCTAACAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAGGTAGAGGTGAAGATCATAGGGTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCCAGGTTGATGGCAGCGTTGAAGGACCTGGAACTGGACGTGAATCATGCCAGCGTATCCGTGGTGAATGATTTGATGATCCAACAGGCCACCGTGAACATGGGAAACCGGTTTTACACTCAGGAACAGCTCCTGTCGGCGCTCTCGTCCAAAATTGGCAATGCACTATAG 1920 0.5516 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDFSSLWLPTPQSAASTTTPGADTARALPPPPPSQSLFNQETLQQRLQTLIEGAEESWTYAIFWQSSYDYSSSTSLLGWGDGYYKGEEDKGKAPKEMSSAEQDHRKKVLRELNSLISGSSASADDVDEEVSDTEWFFLVSMTQSFLSGSGLPGQAFLNSSPVWVAGADRLSDSTCERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMKKVRDLFNFNNPDAGFWPLNCVATDQGENDPSSLWLNPSSSIEIKGTSNAVAPVSANAPLRKTMPFETPGSSTLTETPSAAAAHVPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPGVAAEETNKKRRSPVSRSSIDDGMLSFTSGVIIPASNIKPGAVAGGGGASGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLELATKNRSRPSPPPGPPPSNKEAKETTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLELDVNHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGNAL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00145 639 Coils Coil 498 532 - -
Phco8g00145 639 CDD bHLH_AtAIB_like 456 532 - -
Phco8g00145 639 PANTHER MYC 22 634 IPR045084 GO:0003700|GO:0006355
Phco8g00145 639 MobiDBLite consensus disorder prediction 413 469 - -
Phco8g00145 639 Gene3D - 452 525 IPR036638 GO:0046983
Phco8g00145 639 FunFam Transcription factor bHLH13 452 526 - -
Phco8g00145 639 MobiDBLite consensus disorder prediction 528 552 - -
Phco8g00145 639 MobiDBLite consensus disorder prediction 36 61 - -
Phco8g00145 639 MobiDBLite consensus disorder prediction 428 469 - -
Phco8g00145 639 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 529 IPR036638 GO:0046983
Phco8g00145 639 MobiDBLite consensus disorder prediction 310 332 - -
Phco8g00145 639 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 248 IPR025610 -
Phco8g00145 639 Pfam Helix-loop-helix DNA-binding domain 463 508 IPR011598 GO:0046983
Phco8g00145 639 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Phco8g00145 639 SMART finulus 465 514 IPR011598 GO:0046983
Phco8g00145 639 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00145 Phco-Chr8 1286186 1288105 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00145 bHLH-MYC_N 9.2e-54 CL0161