Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00134 ATGGAGCTTTCTCAGCTTGGTTTCCTAGATGAATTGGTAGCTCCAAGAAGAGATACATGGAATGCTTTGTCTACTGGCTTCTTGGACCTTTTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAACCCATCTTTGGCCACCTCAAACTCTCTATTTGGTGCATTTTCAGCACCATTAGACCGCAGATCTGAATGCTCTTACATCAATGAAGTACCACCATACCCATTTGCCGATGGCTTTACAATGCCATTGCCAGAGCTTCACCCTGGGAACGATGATCCCCCACCTCCACTCCCACCCACAGTGGAGGATGAAGGGATTGCCTTTCATGACAACAACAACAAGAAGAAGTTTGAAGAAACCAAGGGTGTCTGCAAAGTTGAGGAACAAGGCTCAGAGATTCCACTCTTCAACATAGGCATGTCTGATGATGGAGAGAGAAAACCGAAGACCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGCCTTTCCATGCTTAGGTCAATAGTCCCCAAAATCAGCAAGATGGACAGAACCTCTATTCTTGGGGATACTATAGACTATATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGTGGAAGAGGGCACAAGTCAGATTAATCTGTTGGGCATTTCAAAGGAACAACTCAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAAGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGGTGATCAGAGAAATTGCATTGGCCCCGAGGAGATAAAACAATCACTATTCAGAAATGCAGGGTTTGTTGGGAAATGTCTCTAG 996 0.4398 MELSQLGFLDELVAPRRDTWNALSTGFLDLLSNGWSFDTFLENPSLATSNSLFGAFSAPLDRRSECSYINEVPPYPFADGFTMPLPELHPGNDDPPPPLPPTVEDEGIAFHDNNNKKKFEETKGVCKVEEQGSEIPLFNIGMSDDGERKPKTKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEVEEGTSQINLLGISKEQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSMEASCSEVGDQRNCIGPEEIKQSLFRNAGFVGKCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00134 331 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Phco8g00134 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Phco8g00134 331 SMART finulus 163 212 IPR011598 GO:0046983
Phco8g00134 331 Gene3D - 145 207 IPR036638 GO:0046983
Phco8g00134 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 123 326 - -
Phco8g00134 331 MobiDBLite consensus disorder prediction 144 159 - -
Phco8g00134 331 MobiDBLite consensus disorder prediction 138 159 - -
Phco8g00134 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00134 Phco-Chr8 1200858 1202202 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00134 HLH 7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00478 4 3359838 3363209 Phco8g00134 8 1200858 1202202 PCT