Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00118 ATGGTACCACCAGAAGGCATGCCACCAACACCGAAAGACCATGAGGTCACTGAGGGCCGCAAAACGACGAGGCCAGCACCGGAACAAGGTGTGAAGTGCCCAAGATGTGACTCACCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACGCAGCCCAGGCACTTCTGCAAGACGTGCAGGAGGTACTGGACCAACGGTGGTGCCTTGCGGAACGTCCCAATAGGAGGTGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCTTCTTCATCCTCCTCCAGACTCTCCTGTGACCCCAAAGACTTCAATTTTCATGGTCTCACAGTTCCACCTTCCGTTGACTTTAACCTCGGAGGGTTGCCCTTTCCCTCCAGGCTCAGTACTTTCAACACTCAACACCTCTCAACAACCCCCACTGGGGTGTTCAACCAGTTCTCTTCTTTTGGGGACGTTGCATCATCTTCAACCAGTTCTCTTTCTGCTTTGTCTGCCTTCCAACTTGACCCCCCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTTGTTCCGCCCAACCCTGACCTCTGGGCACTACGTAGGTCCGAAAGGGCCTCACTATCTGATCCATTGAACAGTGCAATGCAAACCCTGCAGACTATGGAAGCCATGAACGTTCACAGCAGCCTTGCCTCTTCAATTGAGTCGCTGAGCAACATCAACCAGGATTTGCACCTGAAGCTGCAGCAGCAGCGTATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGTTGCGCTGAATGGTTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTCTCAGAACCTTGCGATCTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAACGGAGGCCCAAGTGGGGAGACAGTTACTGCAGCATCCACCGAATGGTTCTTTGGGAATTCCTTTCCCTCCGTGTCTCCTTCAACAAGCAATGGTGGAGCCAATGTTAACCACATTAGCAACGATCCAAACAACAACTGGACTGGTGCCCTTGCCTGGGGAGATTTGCAGCAGCAACAATACAGTGCTTTGCCCTAG 1086 0.523 MVPPEGMPPTPKDHEVTEGRKTTRPAPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSSSSSSRLSCDPKDFNFHGLTVPPSVDFNLGGLPFPSRLSTFNTQHLSTTPTGVFNQFSSFGDVASSSTSSLSALSAFQLDPPAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHSSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSVALNGFGNQKLLQPVSSQNLAISKPENLPAGSSINGGPSGETVTAASTEWFFGNSFPSVSPSTSNGGANVNHISNDPNNNWTGALAWGDLQQQQYSALP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00118 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 247 IPR045174 GO:0003700|GO:0006355
Phco8g00118 361 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Phco8g00118 361 MobiDBLite consensus disorder prediction 76 99 - -
Phco8g00118 361 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Phco8g00118 361 MobiDBLite consensus disorder prediction 1 32 - -
Phco8g00118 361 MobiDBLite consensus disorder prediction 85 99 - -
Phco8g00118 361 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00118 Phco-Chr8 1068038 1069123 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco8g00118 zf-Dof 3.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00454 4 3145174 3146199 Phco8g00118 8 1068038 1069123 PCT